PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g061650.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NF-YB

Protein Properties

Length: 184aa MW: 19957.3 Da PI: 7.2605

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g061650.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	177.6	1.1e-55	36	130	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrflPian+srimk+ lP n+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy+eplkvyl++yre ++ Csa09g061650.2 36 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLMRYREGDT 130 69*****************************************************************************************9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.7E-52	34	145	IPR009072	Histone-fold
SuperFamily	SSF47113	7.94E-40	39	158	IPR009072	Histone-fold
Pfam	PF00808	2.8E-27	42	106	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.2E-21	70	88	No hit	No description
PROSITE pattern	PS00685	0	73	89	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	4.2E-21	89	107	No hit	No description
PRINTS	PR00615	4.2E-21	108	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MLGRIRVSEM AESQTGGGGG GSHESGGDQS PRSLNVREQD RFLPIANISR IMKRGLPLNG 60 KIAKDAKETM QECVSEFISF VTSEASDKCQ REKRKTINGD DLLWAMATLG FEDYIEPLKV 120 YLMRYREGDT KGSGKGGESS GKRDGQPSQV SQFSQLPQQG SFPQGPYGNS QASNMMVQLP 180 GTE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-47	36	127	1	92	Transcription factor HapC (Eurofung)
4g92_B	2e-47	36	127	1	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g061650.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176827	0.0	AK176827.1 Arabidopsis thaliana mRNA for transcription factor NF-Y, CCAAT-binding - like protein, complete cds, clone: RAFL25-38-H16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504090.1	1e-110	PREDICTED: nuclear transcription factor Y subunit B-10-like
Swissprot	Q67XJ2	1e-110	NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBL	A0A178VNV1	1e-108	A0A178VNV1_ARATH; NF-YB10
STRING	Bostr.11793s0061.1.p	1e-123	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53340.1	4e-96	nuclear factor Y, subunit B10

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]