PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g061600.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 245aa    MW: 27520.6 Da    PI: 4.2055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g061600.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.15.7e-17411151797
                     E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +p +f+e+   +   + t +l+ + g+ W+v +  +k +++  +t+GW++F+++++L +g+f++F +dg+++f   v+vf
  Csa09g061600.1  41 AIPLSFMEHLADP--LPNTAKLQGTGGKDWTVSM--TKIRDGASFTDGWSKFARDHELVDGEFLTFVYDGNRTF--EVSVF 115
                     59*****666655..889****************..999999***************************98888..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.8E-1424118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-2039117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2039119IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-1441115IPR003340B3 DNA binding domain
CDDcd100171.12E-1642115No hitNo description
PROSITE profilePS5086312.54842118IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPTSPWLNMK MTFCFLVSSR CSSLKRPLNH LYNKFTFVHQ AIPLSFMEHL ADPLPNTAKL  60
QGTGGKDWTV SMTKIRDGAS FTDGWSKFAR DHELVDGEFL TFVYDGNRTF EVSVFGRLGC  120
KETRAEAETI EVSGSSSDSE EDEEEPSTDV DYDLSLGEDE EISQSLYPLE EEETESDAAA  180
VFEGNVDIAA LTNPHFPTTL KNRIYELLIP ANIVKDYSLE FGESVKYIDE EGTLVGLRGK  240
WADNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A2e-154212026104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g061600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426969.11e-147PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV57e-83REM20_ARATH; B3 domain-containing protein REM20
TrEMBLR0HPM71e-108R0HPM7_9BRAS; Uncharacterized protein
STRINGXP_010426969.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-79B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]