PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g061160.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRF

Protein Properties

Length: 471aa MW: 52773.5 Da PI: 9.4394

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g061160.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	79.7	2.8e-25	225	269	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC+RtDGKkWRCsr+v++g+k+C+rH+hrgr+rsrk++e+ Csa09g061160.1 225 DPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVET 269 79****************************************986 PP
2	QLQ	53.4	7.9e-19	156	191	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F++aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k Csa09g061160.1 156 LFSWAQWQELELQALIYRYMLAGASVPQELLLPIKK 191 5*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.9E-11	155	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	20.689	156	191	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.4E-13	157	189	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.479	225	269	IPR014977	WRC domain
Pfam	PF08879	2.2E-21	226	268	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
QRRSKKKKGS FIFTSEAKQI RDFCCGCLCL LSQTLSRNKK ISELRKKKKN YPKSNQHISL 60 SLFLSLSLTL SFVSMDLQLK QWRSQQQNES EEQGSATKIS NFFFDQIQSQ TAATSGAAAA 120 APLPLFVPEP TSSSSFSCFS PDSSSSSSKF LKIGNLFSWA QWQELELQAL IYRYMLAGAS 180 VPQELLLPIK KSLIHQSPMH FLHHPLQHSF PHQQPSWYWG RGAMDPEPGR CKRTDGKKWR 240 CSRDVVAGHK YCDRHIHRGR NRSRKPVETA TTTTTTTTTT TATTAAPSFV LGEELGHGHR 300 PNNNHFFSSG SSQHLQLNHQ QSCSSEMKQE NNNNSNNHKR PYEAQNGFSN GRSDDGHILR 360 HFFDDWPRSS DSTSSPMSSS NCHLSISMPG NGNTSSDVSL KLSTGNEEEE EENMRNNNNN 420 NNNEREQLNW WSNGGNHHNN MGGPLAEALR SASSTPSVLH QMGISTQVFH *

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

QRRSKKKKGS FIFTSEAKQI RDFCCGCLCL LSQTLSRNKK ISELRKKKKN YPKSNQHISL  60
SLFLSLSLTL SFVSMDLQLK QWRSQQQNES EEQGSATKIS NFFFDQIQSQ TAATSGAAAA  120
APLPLFVPEP TSSSSFSCFS PDSSSSSSKF LKIGNLFSWA QWQELELQAL IYRYMLAGAS  180
VPQELLLPIK KSLIHQSPMH FLHHPLQHSF PHQQPSWYWG RGAMDPEPGR CKRTDGKKWR  240
CSRDVVAGHK YCDRHIHRGR NRSRKPVETA TTTTTTTTTT TATTAAPSFV LGEELGHGHR  300
PNNNHFFSSG SSQHLQLNHQ QSCSSEMKQE NNNNSNNHKR PYEAQNGFSN GRSDDGHILR  360
HFFDDWPRSS DSTSSPMSSS NCHLSISMPG NGNTSSDVSL KLSTGNEEEE EENMRNNNNN  420
NNNEREQLNW WSNGGNHHNN MGGPLAEALR SASSTPSVLH QMGISTQVFH *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	7	RRSKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g061160.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY102637	0.0	AY102637.1 Arabidopsis thaliana transcription activator (GRF4) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426922.1	0.0	PREDICTED: growth-regulating factor 4-like
Swissprot	Q8L8A7	0.0	GRF4_ARATH; Growth-regulating factor 4
TrEMBL	R0HJT5	0.0	R0HJT5_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010426922.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1926	26	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-158	growth-regulating factor 4

Publications ? help Back to Top
Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]