PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g055770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family BES1
Protein Properties Length: 280aa    MW: 30507 Da    PI: 9.2383
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g055770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822206.47.8e-64141541145
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 
                     +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkALc eAGw+v++DGttyrkgs+p+         +++ p+ss+q
  Csa09g055770.1  14 AATGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHEDGTTYRKGSRPM---------ETTPPCSSIQ 99 
                     5799************************************************************************.........8999****** PP

          DUF822  96 sslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145
                     +s++ssa++sp++sy+asp+sss+psp+++d+i+++ +     + l+p+l++l++
  Csa09g055770.1 100 LSPQSSAFQSPIPSYQASPSSSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 154
                     ********************************98764456666888888888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.4E-6116152IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTASGGGEGG GSTAATGRMP TWKERENNKR RERRRRAIAA KIFTGLRSQG NYKLPKHCDN  60
NEVLKALCLE AGWIVHEDGT TYRKGSRPME TTPPCSSIQL SPQSSAFQSP IPSYQASPSS  120
SSYPSPTRFD HIPNRFDPNQ SSTYLIPYLQ NLASSGNLVP LRISNSAPVT PPLSSPRGST  180
PRLPRWQSSN FPVSAPSSPT RRLHHYTSIP ECDESDVSTV DSCRWGNFQP VNVSQTCPPS  240
PTFNLVGDVS VKPWEGEKIH DVGIDDLELT LGNNTKGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-251889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-251889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-251889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-251889372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g055770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0024521e-139BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBankBT0063101e-139BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426615.10.0PREDICTED: BES1/BZR1 homolog protein 1
SwissprotQ9S7F31e-155BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBLR0FPV11e-161R0FPV1_9BRAS; Uncharacterized protein
STRINGXP_010426615.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144671721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50750.11e-140BES1/BZR1 homolog 1