PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa09g053360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 26222.1 Da PI: 8.4965 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2.1e-37 | 24 | 82 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rk k+ Csa09g053360.1 24 TEQLPCPRCDSNNTKFCYYNNYNFSQPRHFCKGCRRYWTHGGTLRDIPIGGGTRKGAKR 82 6899***************************************************8776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 4 | 81 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.7E-32 | 25 | 80 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.696 | 27 | 81 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 29 | 65 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MPTSDSSDSR RIVMKPHGVT APNTEQLPCP RCDSNNTKFC YYNNYNFSQP RHFCKGCRRY 60 WTHGGTLRDI PIGGGTRKGA KRSRTCSSSN SASSVSAVNS VVSSANGVRC VTPVLFPPHS 120 SISNGCTHSV DSDAKGSALS LCGSFTSLLN PNAAATATHG SGSVIGLGGF GIGLGSGFDD 180 VSFGLGRAMW PFSTVNDAGT TNVGSNGGHH AVPMPATWQF EGVESNVGGG FVSGEYFAWP 240 DLSITTPGNS LK* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa09g053360.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010426587.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 1e-122 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | R0FTS8 | 1e-136 | R0FTS8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010426587.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-122 | OBF binding protein 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|