PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g052630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 306aa    MW: 33467.2 Da    PI: 9.9238
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g052630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +        k R+  ++k++w++
   Csa09g052630.1  5 KQKWTAEEETALKAGVLKHGTGKWRTILSDPEyssvlKSRSNVDLKDKWRN 55
                     79***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.501161IPR017930Myb domain
SuperFamilySSF466892.39E-15261IPR009057Homeodomain-like
SMARTSM007171.1E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-14556IPR009057Homeodomain-like
PfamPF002493.2E-8555IPR001005SANT/Myb domain
CDDcd116604.97E-18656No hitNo description
SMARTSM005262.4E-13124191IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150418.85128196IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.81E-12128205IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.8E-9130194IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005382.1E-6131189IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGAPKQKWTA EEETALKAGV LKHGTGKWRT ILSDPEYSSV LKSRSNVDLK DKWRNISVTA  60
LWGSRKKAKL AQKGTPTSGP RPDDNATAIT IVSLANGHIG GDVGGQLMLD APSPPEASCE  120
PPRAFKGPFT SVDKIILEAI TNLKRPFGPD GKSILRYIEE NFKMQQDMKR LVSSRLKYLT  180
NVGTLVKTKH KYRISPNYMD EVARQRSPQL FLEGNKENTP KPEENGIKNL TKSHVDGEVL  240
TIKGMTEKEA AAAAARAVAE AEFAIAEAEE AAREADEAEA EAEAAHIFAK AAMKALKYRM  300
HSQTR*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g052630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426515.10.0PREDICTED: telomere repeat-binding factor 3-like
SwissprotQ9M2X31e-152TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBLR0FQN81e-172R0FQN8_9BRAS; Uncharacterized protein
STRINGXP_010426515.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38092759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-132telomere repeat binding factor 3
Publications ? help Back to Top
  1. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]