PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g050690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 741aa    MW: 82011.8 Da    PI: 6.633
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g050690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC175.36.3e-555496531102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+ fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl
  Csa09g050690.1 549 QLQLFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 643
                     79*****998899********************************************************************************** PP

           NF-YC  93 vdivprdelk 102
                     vdivprde+k
  Csa09g050690.1 644 VDIVPRDEIK 653
                     *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF041852.4E-10763419IPR007312Phosphoesterase
SuperFamilySSF536498.83E-6197225IPR017850Alkaline-phosphatase-like, core domain
SuperFamilySSF536498.83E-6310420IPR017850Alkaline-phosphatase-like, core domain
SuperFamilySSF471131.02E-32538643IPR009072Histone-fold
Gene3DG3DSA:1.10.20.104.5E-36563635IPR009072Histone-fold
PfamPF008089.4E-20571634IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MFFQETNLLR QNKTTESNPS QKKSLNQMKP SSVSRFSLTF SHLLTLYCLL IPTQGSHQWD  60
SPIKTVVVLV LENRSFDHLL GWMKKSVNPT INGVTGQECN PVPNSTQTIC FSSDAEFVDP  120
DPGHSFEAVE QQVFGSGSGS GQIPSMMGFV EQALSMPGNL SETVMKGFRP ESVPVYAELV  180
KEFAVFDRWF SSIPGPTQPN RLFVYSATSH GSTSHVKKQL AQGYPQKTIF DSLHSNDIDF  240
GIYFQNIPTT LFYRNLRQLK YIFNLHQYDL KFKRDAANGK LPSLTVIEPR YFDLKGLPAN  300
DDHPSHDVAN GQKLVKEVYE SLRSSPQWNQ TLLVITYDEH GGFYDHVKTP YVGIPNPDGN  360
TGPAPGFFKF DRLGVRVPTI MVSPWIKKGT VVSEAKGPTE SSEFEHSSIP ATIKKLFNLS  420
SNFLTHRDAW AATFEDVVSH LTTPRTDCPM TLPDVAPIRA TEPKEDAALS EFQGEVVQLA  480
AVLNGDHFLS SFPDEVGKKM TVKQAHEYVK GATSRFIRAS KEAMKLGTTI SATGGGASYH  540
HLLQQQQQQL QLFWTYQRQE IEQVNDFKNH QLPLARIKKI MKADEDVRMI SAEAPILFAK  600
ACELFILELT IRSWLHAEEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDEAAVLG  660
GGMVAPPTAS GVPYYYPPMG QPAGPGGMMI GRPAMDPSGV YVQPPSQAWQ SVWQTSAGTG  720
DDVSYGSGGS TGQGNLDGQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B7e-51557649395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1621627RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g050690.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by inorganic phosphate deprivation.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0842960.0AB084296.1 Arabidopsis thaliana mRNA for phosphatidylglycerol specific phospholipase C, complete cds, clone:PC-PLC6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426358.10.0PREDICTED: non-specific phospholipase C6-like
SwissprotQ8H9650.0NPC6_ARATH; Non-specific phospholipase C6
TrEMBLR0FMT90.0R0FMT9_9BRAS; Uncharacterized protein
STRINGXP_010426358.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-103nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Nakamura Y, et al.
    A novel phosphatidylcholine-hydrolyzing phospholipase C induced by phosphate starvation in Arabidopsis.
    J. Biol. Chem., 2005. 280(9): p. 7469-76
    [PMID:15618226]
  2. Wimalasekera R,Pejchar P,Holk A,Martinec J,Scherer GF
    Plant phosphatidylcholine-hydrolyzing phospholipases C NPC3 and NPC4 with roles in root development and brassinolide signaling in Arabidopsis thaliana.
    Mol Plant, 2010. 3(3): p. 610-25
    [PMID:20507939]
  3. Peters C, et al.
    Nonspecific phospholipase C NPC4 promotes responses to abscisic acid and tolerance to hyperosmotic stress in Arabidopsis.
    Plant Cell, 2010. 22(8): p. 2642-59
    [PMID:20699393]
  4. Pokotylo I, et al.
    The plant non-specific phospholipase C gene family. Novel competitors in lipid signalling.
    Prog. Lipid Res., 2013. 52(1): p. 62-79
    [PMID:23089468]
  5. Krčková Z, et al.
    Arabidopsis non-specific phospholipase C1: characterization and its involvement in response to heat stress.
    Front Plant Sci, 2015. 6: p. 928
    [PMID:26581502]