PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g050480.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 456aa    MW: 50363.3 Da    PI: 4.9144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g050480.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.26.3e-14115140126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++e C+f++rtG Ck+G++CkF+H+
  Csa09g050480.1 115 PGEEDCSFYMRTGSCKFGSTCKFNHP 140
                     5899*********************9 PP
2zf-CCCH34.14.7e-11171193527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C++++rtG CkyG++C+F+H++
  Csa09g050480.1 171 DCKYYFRTGGCKYGETCRFNHSK 193
                     6********************95 PP
3zf-CCCH40.25.7e-13213238126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C++++r+G Ck+G+ CkF+H+
  Csa09g050480.1 213 PGEVECPYYMRNGSCKFGAECKFNHP 238
                     5789*********************9 PP
4zf-CCCH215.8e-07355380227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+  +C+++H++
  Csa09g050480.1 355 DQPECSYYMKTGDCKFKFNCRYHHPK 380
                     689*********************96 PP
5zf-CCCH344.9e-11401425226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++r+G+Ck+G+ C+F H+
  Csa09g050480.1 401 DQSVCTHYSRYGICKFGPACRFDHS 425
                     5789********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.056114142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6114142IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-7114141IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-11116140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5120139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882166194IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-5166193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5169193IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8171193IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5172193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516212240IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-7212239IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10214238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5216239IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4218237IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.15353381IPR000571Zinc finger, CCCH-type
SMARTSM003560.2353380IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4355380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5357383IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6398425IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4399426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.249399427IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8401425IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4404426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MANSEKIADG FEAKPVSGSY SGDLSADRSL SDVINHETEE DLSDQFKNVG LNGVTKEQSE  60
TRMSGGVCEG SGGLDSNAVE ITQEEDEEEE NGDGDGYGWS ENESEGSEAV YPVRPGEEDC  120
SFYMRTGSCK FGSTCKFNHP LSRKIQIVSK IARDNKVKEK EEDGDNLRQI DCKYYFRTGG  180
CKYGETCRFN HSKTNSCLAS APELNFLGLP IRPGEVECPY YMRNGSCKFG AECKFNHPDP  240
TTIGGTDSPS FRGNNNVSIG SFSPKSTFQA SSTSWSSPRH ANGSTPFIPV MLSQTHGVPS  300
QTPEWNSYQA SVYSSERGVF TPSTTYLMNN TSAETSMLSQ YRYQMPAEEF PERPDQPECS  360
YYMKTGDCKF KFNCRYHHPK NRLPKLPPYA LNDKGLPLRP DQSVCTHYSR YGICKFGPAC  420
RFDHSVQPPY SAESSQAIVE PPQVGANGNE SDGWN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g050480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426336.10.0PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1
SwissprotQ9STM40.0C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLD7LRW70.0D7LRW7_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010426336.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]