PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g048690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 266aa    MW: 29984.3 Da    PI: 4.6422
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g048690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.31.1e-091258550
                    SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
          SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                    ++s+++  f +R  g  KKA ELSvLC+  v  i +++++  l+ ++
  Csa09g048690.1 12 DDSKKKKYFKQRFPGFKKKATELSVLCGNSVGFICYGPNNnDLHVWP 58
                    55666667888999999********************8752688886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.8951151IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-131293IPR002100Transcription factor, MADS-box
PfamPF003193.9E-91252IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MAPRNNKFSD DDDSKKKKYF KQRFPGFKKK ATELSVLCGN SVGFICYGPN NNDLHVWPEP  60
QDNPQALTGI VGKFNALSDH KRKNHACDLY DFVSDIKGFS GEDFRRHIDK LSSHIVEIKQ  120
LKTSILRRRG DSKKPKPKET EEEDDHIRVS ENATITNCNE AMMMPEDRLG FDEFPGYHET  180
DSSLGSYATF TDVGVSEDSS LFDPFTFGDY FPVPPTDNFG VDGVWDLCGM DLEFSSLFPG  240
YDPLPTDSFM SSYQTPVIED FGSVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g048690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084806.10.0PREDICTED: agamous-like MADS-box protein AGL49
TrEMBLD7KXG11e-83D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010451530.11e-155(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59810.12e-48AGAMOUS-like 50