PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g034210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 244aa MW: 27368.8 Da PI: 9.575 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.4 | 6.7e-41 | 6 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrF Pt+eel+++yL+ +++g + ++++ i+ +d+++veP +Lp+ +++++ ++w fF++r++++a+g r++r+t+sgyWkatg+ +v Csa09g034210.1 6 RVGFRFYPTEEELLTFYLRIQLSGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKATGSPGPV 100 68***************************999**************9656766667888************************************ PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++ Csa09g034210.1 101 FSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 136 **********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-44 | 4 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.855 | 5 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-20 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGEELRVGFR FYPTEEELLT FYLRIQLSGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR 60 GDAEQWLFFV PRQEREARGG RPSRTTRSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK 120 APTGRKTKWK MNEYKAVDET ASASTNPKLR NEFSICRIYI KSGSSRAFDR RPTEAYGIER 180 KVPSNRVETS SRVTISTSPE TSHSGGNNVD LPVNATTINT QSISEMVDGL SLPFWEWEQM 240 TWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-33 | 8 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-33 | 8 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-33 | 8 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-33 | 8 | 166 | 20 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swm_B | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swm_C | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swm_D | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swp_A | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swp_B | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swp_C | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
3swp_D | 6e-33 | 8 | 166 | 23 | 173 | NAC domain-containing protein 19 |
4dul_A | 5e-33 | 8 | 166 | 20 | 170 | NAC domain-containing protein 19 |
4dul_B | 5e-33 | 8 | 166 | 20 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g034210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL138641 | 1e-108 | AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7. | |||
GenBank | CP002686 | 1e-108 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010425854.1 | 1e-180 | PREDICTED: putative NAC domain-containing protein 61 | ||||
Swissprot | Q9M290 | 1e-147 | NAC61_ARATH; Putative NAC domain-containing protein 61 | ||||
TrEMBL | B3H506 | 1e-157 | B3H506_ARATH; NAC domain containing protein 61 | ||||
STRING | XP_010425854.1 | 1e-180 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1445 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 1e-152 | NAC domain containing protein 61 |