PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g034120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 210aa    MW: 24181.2 Da    PI: 8.6794
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g034120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1578.1e-49571831128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     + pGf+F+Ptd el+++yLk+k++g + ++ e+i+ev+iy++ePwdLp k++ ++++ew+fF+ r kky++g++++rat+ gyWkatgk+++v+s
  Csa09g034120.1  57 MFPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPEVEIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATRMGYWKATGKERNVKS 150
                     579************************999.89***************778888899************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++e++g+k+tLvf+ grapkg +t+W+mhey +
  Csa09g034120.1 151 -GSEVIGTKRTLVFHIGRAPKGGRTEWIMHEYCM 183
                     .9******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5151184IPR003441NAC domain
PROSITE profilePS5100547.97257198IPR003441NAC domain
PfamPF023653.8E-2559182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
CIVFFTSLVP IPETFFLFLF VTPQFLRSQR ERTLDPLSSL IFFYMAAAPV EPAVTTMFPG  60
FKFSPTDIEL ISYYLKRKMD GLERSVEIIP EVEIYNFEPW DLPDKSIVKS DSEWFFFCAR  120
GKKYPHGSQN RRATRMGYWK ATGKERNVKS GSEVIGTKRT LVFHIGRAPK GGRTEWIMHE  180
YCMIGVSLDI VMVIEYLKCY IGCSSYLPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-40441843143NO APICAL MERISTEM PROTEIN
1ut4_B5e-40441843143NO APICAL MERISTEM PROTEIN
1ut7_A5e-40441843143NO APICAL MERISTEM PROTEIN
1ut7_B5e-40441843143NO APICAL MERISTEM PROTEIN
3swm_A7e-405918422146NAC domain-containing protein 19
3swm_B7e-405918422146NAC domain-containing protein 19
3swm_C7e-405918422146NAC domain-containing protein 19
3swm_D7e-405918422146NAC domain-containing protein 19
3swp_A7e-405918422146NAC domain-containing protein 19
3swp_B7e-405918422146NAC domain-containing protein 19
3swp_C7e-405918422146NAC domain-containing protein 19
3swp_D7e-405918422146NAC domain-containing protein 19
3ulx_A6e-405318311140Stress-induced transcription factor NAC1
4dul_A5e-40441843143NAC domain-containing protein 19
4dul_B5e-40441843143NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g034120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529511e-153AK352951.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425846.11e-105PREDICTED: NAC domain-containing protein 60-like isoform X1
RefseqXP_010514768.11e-105PREDICTED: NAC domain-containing protein 60
SwissprotQ9LXL91e-102NAC60_ARATH; NAC domain-containing protein 60
TrEMBLR0HPC61e-101R0HPC6_9BRAS; Uncharacterized protein
STRINGXP_010425846.11e-105(Camelina sativa)
STRINGXP_010514768.11e-104(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-104NAC domain containing protein 60
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]