PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g025250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 420aa    MW: 47114.3 Da    PI: 6.4601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g025250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding64.12.7e-20173220148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT eEd+ll+++v+ +G g+W+t+a++ g++R++k+c++rw +yl
   Csa09g025250.1 173 KGPWTLEEDKLLAEYVTTHGEGRWSTVAKCAGLNRSGKSCRLRWVNYL 220
                      79********************************************97 PP
2Myb_DNA-binding49.11.3e-15226270147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
   Csa09g025250.1 226 RGQITPQEEGIILELHSLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 270
                      7888******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.619168220IPR017930Myb domain
SuperFamilySSF466891.24E-31170267IPR009057Homeodomain-like
SMARTSM007172.0E-16172222IPR001005SANT/Myb domain
PfamPF002494.0E-18173220IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-23174227IPR009057Homeodomain-like
CDDcd001671.67E-12175220No hitNo description
PROSITE profilePS5129424.159221275IPR017930Myb domain
SMARTSM007171.8E-13225273IPR001005SANT/Myb domain
PfamPF002491.9E-13226270IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-23228274IPR009057Homeodomain-like
CDDcd001674.88E-10230270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVRLRGIQLI SVRLRGSKGG YMGQVHSLPL NRKGTWEVWL KPLYRAKSGH KDKQMQEVLG  60
IGSVVDEQNV SQQDTEMESS PPHGSGKDSV GLDFVEANDD LLEESEASQD NLQEEGEVAI  120
GQGNAVLIGM GSDSFASTED DLKGMLDWGV QGHHQKHDHD PYQQQQKQQG CRKGPWTLEE  180
DKLLAEYVTT HGEGRWSTVA KCAGLNRSGK SCRLRWVNYL RPGLKRGQIT PQEEGIILEL  240
HSLWGNKWST IARYLPGRTD NEIKNYWRTH YKKKEKSSSK QEKVKRSQSR KKEVELKPQP  300
QAQPQSHPFQ LVSRDHMKLD NEQNIASSLY YPTSVFNDQF SMPQSVAATS SDHSMIDESH  360
LWGNLWNLND DDLHGFGDGS GQGIPADLSE KFPDGGTEAP SCGSRDYSYT GFYMGGYIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-241732747107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g025250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719800.0AF371980.2 Arabidopsis thaliana putative transcription factor MYB121 (MYB121) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425769.10.0PREDICTED: transcription factor WER-like
TrEMBLQ9LRU51e-168Q9LRU5_ARATH; MYB transcription factor
STRINGXP_010425769.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.11e-149myb domain protein 121