PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g022510.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 338aa    MW: 38119.2 Da    PI: 8.4428
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g022510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87.2e-56251511129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+++yL++kv ++ +++  +i evd++kvePwdLp k+k +ekewyfF+ +d+ky+tg r+nratk+gyWkatgkdke+++ 
  Csa09g022510.1  25 LPPGFRFHPTDEELITHYLRPKVLNSFFSA-LAIGEVDLNKVEPWDLPWKAKIGEKEWYFFCVNDRKYPTGLRTNRATKAGYWKATGKDKEIFK- 117
                     79*************************999.67***************98999*****************************************. PP

             NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lvg+kktLvfykgrapkg+kt+Wvmheyrle
  Csa09g022510.1 118 GKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 151
                     999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-6122175IPR003441NAC domain
PROSITE profilePS5100557.06425175IPR003441NAC domain
PfamPF023655.8E-3026150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDYKVSRIGE IVKGEEVEDS EKIDLPPGFR FHPTDEELIT HYLRPKVLNS FFSALAIGEV  60
DLNKVEPWDL PWKAKIGEKE WYFFCVNDRK YPTGLRTNRA TKAGYWKATG KDKEIFKGKS  120
LVGMKKTLVF YKGRAPKGVK TNWVMHEYRL EGEHAINNLP KTAKNECVIS RVFQKRADGT  180
KVHISGLRMF GSGVNKFEPV GLPRLMDSSP YVKSRGRDSL AGTAVGCLFS HVTCFSDQNY  240
DDKSLVDELK DNSKATRFGS TSTNLMPNIV STLDYDHLSL QDDSSILKML LDSEETQFKK  300
NLENSGSLES ELTASSWHRH SPSCSTGPVN LDNVWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-51151817171NO APICAL MERISTEM PROTEIN
1ut4_B2e-51151817171NO APICAL MERISTEM PROTEIN
1ut7_A2e-51151817171NO APICAL MERISTEM PROTEIN
1ut7_B2e-51151817171NO APICAL MERISTEM PROTEIN
3swm_A2e-511518110174NAC domain-containing protein 19
3swm_B2e-511518110174NAC domain-containing protein 19
3swm_C2e-511518110174NAC domain-containing protein 19
3swm_D2e-511518110174NAC domain-containing protein 19
3swp_A2e-511518110174NAC domain-containing protein 19
3swp_B2e-511518110174NAC domain-containing protein 19
3swp_C2e-511518110174NAC domain-containing protein 19
3swp_D2e-511518110174NAC domain-containing protein 19
4dul_A2e-51151817171NAC domain-containing protein 19
4dul_B2e-51151817171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g022510.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0626381e-177AY062638.1 Arabidopsis thaliana Unknown protein (MRI12.1) mRNA, complete cds.
GenBankBT0087161e-177BT008716.1 Arabidopsis thaliana At3g29035 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425698.10.0PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9LJW30.0NAC59_ARATH; NAC domain-containing protein 59
TrEMBLD7LM770.0D7LM77_ARALL; ANAC059/ATNAC3
STRINGXP_010425698.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.10.0NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]