PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g008900.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 342aa MW: 38536.8 Da PI: 8.2263

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g008900.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.7	4e-31	183	238	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Csa09g008900.1 183 KNRRCWSQELHRRFLNTLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 238 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.68	180	240	IPR017930	Myb domain
SuperFamily	SSF46689	5.15E-17	181	241	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.4E-27	181	241	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.2E-26	183	238	IPR006447	Myb domain, plants
Pfam	PF00249	5.5E-6	185	236	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MKNHNHKRER CSEYIEALEE ERRKINVFQR ELPLCLELVT QAIEAYKREI SGTTTENLYG 60 QSECSEQTTG ECGRVLDLFI PIRHSSTSVE EVDDKDDDEH ESHETNIDFN DKNMKSDWLK 120 SVQLWNQSDA VVSNNRQDCL QNKPETLVKV LKRNDGEEGK NNNIKLSVTS SSGGGSDGRG 180 QRKNRRCWSQ ELHRRFLNTL KQLGGPHVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHAR 240 RPSQTTPNNG NSQNQHFVVV GGIWVPQTNQ STANAVASVE TTTGIYGPMV SPLPSEWPSH 300 SNFSSRISED RSRCSNKGIL RCSSPAMSSS TRTKTKDAKI S*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MKNHNHKRER CSEYIEALEE ERRKINVFQR ELPLCLELVT QAIEAYKREI SGTTTENLYG  60
QSECSEQTTG ECGRVLDLFI PIRHSSTSVE EVDDKDDDEH ESHETNIDFN DKNMKSDWLK  120
SVQLWNQSDA VVSNNRQDCL QNKPETLVKV LKRNDGEEGK NNNIKLSVTS SSGGGSDGRG  180
QRKNRRCWSQ ELHRRFLNTL KQLGGPHVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHAR  240
RPSQTTPNNG NSQNQHFVVV GGIWVPQTNQ STANAVASVE TTTGIYGPMV SPLPSEWPSH  300
SNFSSRISED RSRCSNKGIL RCSSPAMSSS TRTKTKDAKI S*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g008900.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085570	0.0	AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010425231.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9LS00	0.0	HHO1_ARATH; Transcription factor HHO1
TrEMBL	D7LQU6	0.0	D7LQU6_ARALL; Myb family transcription factor
STRING	XP_010425231.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	0.0	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]