PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g008780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | RAV | ||||||||
Protein Properties | Length: 349aa MW: 38918.9 Da PI: 10.0666 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.5 | 1.6e-13 | 62 | 110 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f +eeAa+a++ a+ +++g Csa09g008780.1 62 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEEEAARAYDVAAHRFRG 110 689***9788.8*********3.....5************************998 PP | |||||||
2 | B3 | 99.9 | 1.5e-31 | 193 | 298 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk+ ae+h g + +++ l++ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD + F+++ Csa09g008780.1 193 FEKTVTPSDVGKLNRLVIPKHQAEKHfplpldggnnG--SVKGMLLSFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLICFRRS 285 99******************************88533..35899*************************************************98 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + ++ +l++++ + Csa09g008780.1 286 NGQDDKLFIGWKS 298 7788889999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.8E-9 | 62 | 110 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.49E-26 | 62 | 120 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-17 | 62 | 118 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-21 | 63 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-29 | 63 | 124 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.389 | 63 | 118 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-38 | 186 | 303 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.76E-31 | 189 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.50E-26 | 192 | 287 | No hit | No description |
PROSITE profile | PS50863 | 13.69 | 193 | 300 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.0E-28 | 193 | 299 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-25 | 193 | 300 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MDTMSSVDES STTTDSIHTP VKIPARKSPS PAGLLYRMGS GTSVVLDSDN GLEAESRKLP 60 SSRFKGVVPQ PNGRWGAQIY EKHQRVWLGT FNEEEEAARA YDVAAHRFRG RDAVTNFKET 120 TLVNGNDGGD EDEVDFLNAH SKSEIVDMLR KHTYKEELEQ RKRKRNGNGN KTMGFGSVTA 180 AVMTGFKTSK LLFEKTVTPS DVGKLNRLVI PKHQAEKHFP LPLDGGNNGS VKGMLLSFED 240 VNGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKRLCAGDLI CFRRSNGQDD KLFIGWKSNS 300 GSGSRSGSDR VVRLFGVDIC FNDAAVVAKK EEKDMLVSLR CNKKQRAM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-59 | 189 | 302 | 10 | 120 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g008780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB028607 | 1e-145 | AB028607.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K13N2. | |||
GenBank | AJ441073 | 1e-145 | AJ441073.1 Arabidopsis thaliana mRNA for putative auxin response factor 14 (arf14 gene). | |||
GenBank | AK229415 | 1e-145 | AK229415.1 Arabidopsis thaliana mRNA for AP2 domain transcription factor, complete cds, clone: RAFL16-68-B16. | |||
GenBank | AY087951 | 1e-145 | AY087951.1 Arabidopsis thaliana clone 39877 mRNA, complete sequence. | |||
GenBank | CP002686 | 1e-145 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010425223.1 | 0.0 | PREDICTED: AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
Swissprot | Q9LS06 | 0.0 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | D7LQT8 | 0.0 | D7LQT8_ARALL; Uncharacterized protein | ||||
STRING | XP_010425223.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 1e-178 | ethylene response DNA binding factor 3 |