PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g006810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 429aa    MW: 47465.2 Da    PI: 6.9445
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g006810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.55.3e-32230285156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Csa09g006810.1 230 KARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 285
                     68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.682227287IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-28228288IPR009057Homeodomain-like
SuperFamilySSF466893.05E-17228288IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-26230285IPR006447Myb domain, plants
PfamPF002493.6E-7232283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASSSELSLD CKPQSYSMLL KSFGDNFQSN QTTQKLEDLL SRLDQERLKI DAFKRELPLC  60
MQLLNNAVEV YKQQLEAYRA NSNNNNQSVP TRPVLEEFIP LRNQPEKPNI KGNNWMTTAQ  120
LWSESETKPK NIDSTADQSL HKDEIASSPK LGHFDAKQRN GNGAFLPFSK EHSLPELALS  180
TEVKRVSPTS EHTNGHDGND ESMINNDTNN NNNNSNTNGV SSTTSQSNRK ARRCWSPDLH  240
RRFVQALQML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ KYRLHTRRPS PSPQTSGGPG  300
PHLVVLGGIW VPPEYTTAHG GTPTLYHHQV HHHHTSTAGP PPPHFCSSQE FYTTPPPPQS  360
LHHHHFQTFN GSSGAASTDS THHQLTDSAA DEEKSPESGG GEKKGLAALR EEGEDQSNVN  420
GSEITLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14230283255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g006810.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216620.0AK221662.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-70-E23.
GenBankAY0605590.0AY060559.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
GenBankAY1336300.0AY133630.1 Arabidopsis thaliana At2g03500/T4M8.7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425142.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ850.0EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A1J3ICB90.0A0A1J3ICB9_NOCCA; Transcription factor PCL1
STRINGXP_010425142.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71342843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.10.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]