PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g004840.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ZF-HD

Protein Properties

Length: 322aa MW: 36042.3 Da PI: 8.4053

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g004840.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98	7.1e-31	89	144	4	60
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++YkeClkNhAas Gg+a+DGCg+fmps ge+g+++al+C+AC+CHRnFHRreve e Csa09g004840.1 89 IKYKECLKNHAASKGGNAIDGCGDFMPS-GEDGSIEALTCSACNCHRNFHRREVEGE 144 79***********************9.999*******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.4E-28	89	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-25	89	151	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.0E-30	90	141	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.803	91	140	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.38E-20	218	290	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-31	223	291	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.989	227	291	IPR001356	Homeobox domain
TIGRFAMs	TIGR01565	1.6E-26	229	285	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MEIASQEDPT PINTSYGNSG GGLGNMIHNH HANSAPTSLN ITTPIPLQVS SNGNGLGKNH 60 DYSHHHHHHV GYNIMVGNNN IKKEKPVVIK YKECLKNHAA SKGGNAIDGC GDFMPSGEDG 120 SIEALTCSAC NCHRNFHRRE VEGEEKTFFS PYLNHHQQPP PQRKLMFHHH HHKMMKSPLP 180 QQMIMPIGVA TAGSNSESED LMEEDGGGSL TFWQPQPPPP PYSYGHNQKK RFRTKFTQEQ 240 KEKMMSFAER VGWKMQRQEE SAVQQLCQEI GIRRRVLKVW MHNNKHHLSK KSNNINDNVD 300 QLGNKDVNNA TTENLASTSP S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	5e-23	230	286	18	74	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g004840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004136	0.0	AC004136.3 Arabidopsis thaliana chromosome 2 BAC T8K22 genomic sequence, complete sequence.
GenBank	AY091515	0.0	AY091515.1 Arabidopsis thaliana hypothetical protein At2g02540/T822.16 mRNA, complete cds.
GenBank	AY773834	0.0	AY773834.1 Arabidopsis thaliana clone pENTR221-At2g02540 hypothetical protein (At2g02540) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019085884.1	0.0	PREDICTED: zinc-finger homeodomain protein 3-like
Swissprot	O64722	1e-172	ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBL	R0FPG3	1e-180	R0FPG3_9BRAS; Uncharacterized protein
STRING	XP_010425030.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3339	26	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-158	homeobox protein 21

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]