PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g060690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 210aa MW: 24135.3 Da PI: 6.9138 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.4 | 6e-14 | 73 | 105 | 24 | 56 |
S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ e++ +LA++l+L+ rqV vWFqNrRa++k Csa08g060690.1 73 KLDSERKLKLARELDLEPRQVAVWFQNRRARWK 105 78999***************************9 PP | |||||||
2 | HD-ZIP_I/II | 86.9 | 2.5e-28 | 70 | 134 | 20 | 84 |
HD-ZIP_I/II 20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ++ kL++erK +lareL+l+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++e Csa08g060690.1 70 KDFKLDSERKLKLARELDLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDER 134 3449*********************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.7E-8 | 48 | 111 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-12 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-14 | 72 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.4E-11 | 73 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.84E-10 | 74 | 108 | No hit | No description |
PROSITE profile | PS50071 | 12.698 | 75 | 107 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 82 | 105 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MHGRSLTSLT RSAASAIILT ENFCDFFNLS CNLFYYTTED SSNKAAYTQT GPVISIPESE 60 KIINAYQCSK DFKLDSERKL KLARELDLEP RQVAVWFQNR RARWKVKHLE ESYDSLRQEY 120 DAVWREKQML HDERPLTSHN KLICDAGDET ENYNIKRSRF DDMMNINQIA EGALLLVVVA 180 DLGERTKKAC TIISKVQSDA IRESLKQIS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g060690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214233 | 1e-56 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. | |||
GenBank | KM214234 | 1e-56 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006289347.2 | 2e-50 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Refseq | XP_020879296.1 | 1e-50 | putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | D7LWT8 | 1e-48 | D7LWT8_ARALL; Predicted protein | ||||
STRING | Bostr.2128s0069.1.p | 5e-57 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-39 | homeobox 51 |