PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g060680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 198aa MW: 22818.7 Da PI: 8.9657 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.3 | 4.8e-17 | 62 | 114 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eql +Le F+++ ++ +++ +L+++lgL+ rq vWFqNrRa++k Csa08g060680.1 62 NKRLTSEQLAALEVSFQEDIRLDSDRKLKLSRELGLQPRQTAVWFQNRRARWK 114 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.1 | 3.7e-36 | 60 | 150 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k +rl++eq+++LE sF+e+ +L+++rK +l+reLglqprq avWFqnrRAR+k k+lE+ y++L+++yda+ +en++L++ev++Lr+ + Csa08g060680.1 60 KKNKRLTSEQLAALEVSFQEDIRLDSDRKLKLSRELGLQPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWKENQMLHDEVKKLRAMI 150 589************************************************************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.31E-17 | 47 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.05 | 56 | 116 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-16 | 59 | 120 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.12E-14 | 60 | 117 | No hit | No description |
Pfam | PF00046 | 1.7E-14 | 61 | 114 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-18 | 62 | 124 | IPR009057 | Homeodomain-like |
Pfam | PF02183 | 1.2E-7 | 118 | 149 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MPPPRLESNW LHSFNYDLSA GNSYTHAAVT QTGSVITVPE SEKMINTYHC DLSNNNEMIK 60 KNKRLTSEQL AALEVSFQED IRLDSDRKLK LSRELGLQPR QTAVWFQNRR ARWKVKHLEE 120 SYDSLRQEYD AVWKENQMLH DEVKKLRAMI LRDQGLMTNI NQIAEGGQTN GIGGYNNSPM 180 IVASSRWTRI SQPPNQW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g060680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214233 | 1e-138 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. | |||
GenBank | KM214234 | 1e-138 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424789.1 | 1e-147 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 3e-74 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A077B3F2 | 1e-109 | A0A077B3F2_9BRAS; RCO-A | ||||
STRING | XP_010424789.1 | 1e-146 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-76 | homeobox 51 |
Publications ? help Back to Top | |||
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