PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g059730.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 290aa MW: 32948.2 Da PI: 8.8058

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g059730.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	173	217	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + k++G+g+W++I+r + +Rt+ q+ s+ qky Csa08g059730.1 173 PWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKY 217 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.829	71	124	IPR017877	Myb-like domain
SMART	SM00717	1.6E-7	75	126	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.89E-11	77	131	IPR009057	Homeodomain-like
CDD	cd00167	4.81E-6	79	124	No hit	No description
PROSITE profile	PS51294	18.261	166	222	IPR017930	Myb domain
SuperFamily	SSF46689	4.93E-16	168	223	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-16	169	221	IPR006447	Myb domain, plants
SMART	SM00717	7.0E-9	170	220	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.0E-10	172	216	IPR009057	Homeodomain-like
CDD	cd00167	8.45E-8	173	218	No hit	No description
Pfam	PF00249	2.7E-11	173	217	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
PIAEETVLKL VSELLLPSLF LFFYFSSSSF IKILHTPKKE KNRIRINSPN SFFQQISGFC 60 FCCKKIINRA VINMASSQWT RSEDKMFEQA LVLFPEGSPN RWERIADQLH KSAGEVREHY 120 EALVHDVFEI DAGRVDVPDY MDDSAAASAG WDSAGQISFG SKHADSERKR GTPWTENEHK 180 LFLIGLKRYG KGDWRSISRN VVVTRTPTQV ASHAQKYFLR QNSVKKERKR SSIHDITTVD 240 TNLAMPGSNM DWTGQHGSPV QAPQQQQIMS EFGQQLTTPG HFEDFGFRM*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g059730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY050976	0.0	AY050976.1 Arabidopsis thaliana putative I-box binding factor (At5g04760) mRNA, complete cds.
GenBank	AY088362	0.0	AY088362.1 Arabidopsis thaliana clone 6170 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010423540.1	1e-162	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	4e-56	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	D7LXM5	1e-149	D7LXM5_ARALL; Uncharacterized protein
STRING	XP_010423540.1	1e-162	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	1e-144	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]