PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa08g058820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 884aa MW: 99155.9 Da PI: 8.3469 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 18.7 | 3.9e-06 | 431 | 455 | 1 | 19 |
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG +HkCq++CH GpC pCp Csa08g058820.1 431 CGkrlrcrNHKCQSPCHQGPCAPCP 455 777777779***************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50016 | 8.511 | 84 | 154 | IPR019787 | Zinc finger, PHD-finger |
PROSITE pattern | PS01359 | 0 | 87 | 151 | IPR019786 | Zinc finger, PHD-type, conserved site |
CDD | cd06008 | 8.61E-5 | 186 | 234 | No hit | No description |
Pfam | PF01422 | 2.5 | 198 | 215 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 8.1 | 198 | 216 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.27E-8 | 240 | 288 | No hit | No description |
Pfam | PF01422 | 0.0017 | 250 | 268 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0012 | 250 | 269 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.76E-7 | 293 | 333 | No hit | No description |
Pfam | PF01422 | 0.047 | 303 | 321 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.038 | 303 | 322 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.41E-9 | 347 | 396 | No hit | No description |
Pfam | PF01422 | 0.004 | 357 | 376 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.066 | 357 | 377 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.29E-6 | 400 | 448 | No hit | No description |
Pfam | PF01422 | 0.036 | 410 | 428 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.33 | 410 | 429 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 7.96E-11 | 427 | 475 | No hit | No description |
Pfam | PF01422 | 6.1E-4 | 431 | 455 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0034 | 437 | 456 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 180 | 483 | 494 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 76 | 494 | 515 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 4.8 | 504 | 514 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 77 | 523 | 532 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 140 | 523 | 568 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.078 | 605 | 616 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 11 | 605 | 636 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.053 | 646 | 664 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.097 | 647 | 663 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 50 | 709 | 738 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 6.9 | 711 | 723 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 884 aa Download sequence Send to blast |
MLDMAGTATT EFRWKPPPQP PPQQQTISDS DSDSGSDSEN HQHRHNDLSN SIFKAYLDCH 60 SSSSPSSVDL AKIQSFLASS SSGAVSCLIC LERIKRTDPT WSCTSSCFAV FHLFCIQSWA 120 RQCLDLQAAR AVTRPSSSPT EPEAVWNCPK CRSSYQKSKI PRRYLCYCGK EEDPPADNPW 180 ILPHSCGEVC ERPLSSNCGH CCLLLCHPGP CASCPKLVKA KCFCGGVEDV RRCGHKNFSC 240 GDVCERVLDC NVHQCREICH DGECPPCRER AVYRCCCGKV KEEKDCCERV FRCEASCENM 300 LNCGKHVCER GCHSGECGLC PYQGKRSCPC GKRFYQGLSC DVVAPLCGGT CDKVLGCGYH 360 RCPERCHRGS CLETCRIVVT KSCRCGGTKK QVPCHQELAC ERKCQRVRDC ARHACRRRCC 420 DGECPPCSEI CGKRLRCRNH KCQSPCHQGP CAPCPIMVTI SCACGETHFE VPCGTETNQK 480 PPRCRKLCHI TQLCRHGQNQ KPHKCHYGAC PPCRLLCDEE YPCGHKCKLR CHGPRPPPNR 540 EFMIKPTKKM LNIQAESTPG SPCPRCPELV WRPCVGHHLA AEKMMVCSDK TQFACDNLCG 600 NPLPCGNHYC SFTCHPLEIK SSSLDKRSET CEKCDLRCQK ERTPRCQHPC PRRCHPGDCP 660 PCKTLVKRSC HCGTMVHAFE CIYYNTLSEK DQTKARSCRG PCHRKLPNCT HLCPEICHPG 720 QCPLPEKCGK KVVARCKCLT LKKEWLCQDV QAAHRATGSD PKEVPKNQFG VGLLPCDSNC 780 KSKLQMAESV LQQRNVKVIE EKEEPSGKNA SKRRKKRERG QDIKETTRLQ KLAVATKRIL 840 MVVMLMAMLA AVTYYGYKGI LWLSDWMNEL EEQRQKSRRY PRI* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa08g058820.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK228690 | 0.0 | AK228690.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-04-K08. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423446.1 | 0.0 | PREDICTED: NF-X1-type zinc finger protein NFXL2-like | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | D7LYZ5 | 0.0 | D7LYZ5_ARALL; Transcription factor | ||||
STRING | XP_010423446.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10954 | 27 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |