PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g058460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20724.1 Da PI: 5.7488 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.7 | 7.2e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC++dCv++pyf e+ +++fa+vhk+FGasnv+k l +lp ++r+ a+ ++ yeA r+rdPvyG+v++i++l+qq+ +l++e+ Csa08g058460.1 7 SCGACKFLRRKCNRDCVFSPYFSYEEaSSHFAAVHKVFGASNVSKHLLQLPVHQRNVAAITIPYEALSRMRDPVYGCVAHIFALHQQVVTLQEEI 101 6*********************998868******************************************************************* PP DUF260 95 allkee 100 + l+++ Csa08g058460.1 102 EFLGSQ 107 998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.309 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-35 | 7 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MAGHGSSCGA CKFLRRKCNR DCVFSPYFSY EEASSHFAAV HKVFGASNVS KHLLQLPVHQ 60 RNVAAITIPY EALSRMRDPV YGCVAHIFAL HQQVVTLQEE IEFLGSQMTN FSYSNQNGSQ 120 LNNIPEFVNQ MTMDTTSFVD ESLLNYNEEG RNCLDGFFTN SEETLVNHTW LQDMDYYYAP 180 HN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-34 | 3 | 132 | 7 | 130 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-34 | 3 | 132 | 7 | 130 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g058460.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473857 | 0.0 | AB473857.1 Arabidopsis thaliana ASL24 mRNA for ASYMMETRIC LEAVES2-like 24 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423390.1 | 1e-137 | PREDICTED: LOB domain-containing protein 33 | ||||
Swissprot | Q9LHS8 | 1e-119 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | D7LZ36 | 1e-119 | D7LZ36_ARALL; Predicted protein | ||||
STRING | XP_010423390.1 | 1e-136 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 1e-122 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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