PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g058280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 292aa    MW: 32641.6 Da    PI: 6.9359
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g058280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3107.75.7e-3450163199
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f+k ltpsdv+k++rlv+pk++ae++               ++++e+++ l++ede+g+sW+++++y+++s++yvltkGW++Fvk+++L+ gD+v
  Csa08g058280.1  50 FEKSLTPSDVGKLNRLVIPKQHAEKYfplnavvvssgasdtSSSSEKGMLLSFEDETGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVV 144
                     99***********************************9999777789************************************************ PP

                     EEEE-SSSEE..EEEEE-S CS
              B3  81 vFkldgrsefelvvkvfrk 99 
                      F++++++ ++l+++++r+
  Csa08g058280.1 145 FFQRHRSDIRRLFIGWRRR 163
                     ***98889999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-4146173IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-3048163IPR015300DNA-binding pseudobarrel domain
CDDcd100171.06E-2649152No hitNo description
PfamPF023624.1E-3150163IPR003340B3 DNA binding domain
PROSITE profilePS5086314.05750164IPR003340B3 DNA binding domain
SMARTSM010198.2E-2750164IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSVNHYSTDH HHTLLWQQQQ QQQQHRHTTD TSEATTTATW LNDDLKESLF EKSLTPSDVG  60
KLNRLVIPKQ HAEKYFPLNA VVVSSGASDT SSSSEKGMLL SFEDETGKSW RFRYSYWNSS  120
QSYVLTKGWS RFVKDKQLDP GDVVFFQRHR SDIRRLFIGW RRRGQGSSSS SAAATNSATS  180
MVAPSYRQIH HASTNYSNPP SHSEYSHYGA TLATAAEETH STPSSSAVAG GSSRTLRLFG  240
VNLECQMDEN DGDDSVVAAA AVESPEGYYG QNMYYYYSHP HNMNIAFTGE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-51461634113B3 domain-containing transcription factor NGA1
5os9_B3e-51461634113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g058280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0067000.0AB006700.2 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHF15.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423372.10.0PREDICTED: B3 domain-containing protein At5g06250-like isoform X1
SwissprotQ9FNI31e-151Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A178UF661e-155A0A178UF66_ARATH; AP2/B3-like transcriptional factor family protein
TrEMBLA0A384L0Y11e-155A0A384L0Y1_ARATH; DPA4
STRINGXP_010423372.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-124B3 family protein