PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa08g057970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 254aa MW: 28030.8 Da PI: 4.58 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 41.6 | 1.5e-13 | 12 | 47 | 5 | 40 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 n++ r ++ kR++ +lKK +ELS+LCd+++++++f Csa08g057970.1 12 NERARRLSLEKRLASLLKKTKELSILCDMQACLVVF 47 88999******************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.4E-5 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.07E-17 | 2 | 84 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-15 | 9 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.732 | 12 | 47 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-11 | 12 | 48 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 254 aa Download sequence Send to blast |
MGKRKTPTTW ANERARRLSL EKRLASLLKK TKELSILCDM QACLVVFDRE VDQLVVWPAP 60 QTAKSLFDKF YSLTDHERNL KAVDPESFIQ TNIQKLEKKI ADTRKAITEF QMEDLMLELA 120 LGRQLADLSP TEVDKLLSYT GKKIMCLRKE MGSAEQLDMS VDEASLGDAT LRASNVPSAG 180 WGGNVMETGS MYYFDQWVST DPEVQEPSDE THLPTMVTGM DPNMEPAVGD KNLGGTSKGE 240 SSKAAGGAED DAE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa08g057970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423334.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | Q9FG20 | 2e-92 | Q9FG20_ARATH; AGAMOUS-like 96 | ||||
STRING | XP_010423334.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8774 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06500.1 | 3e-97 | AGAMOUS-like 96 |