PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g057380.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 296aa    MW: 33111.1 Da    PI: 5.6473
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g057380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.65.8e-186861898
           NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                    ++++P arikki++adedv +i+  +Pvl+ska elf+ +l   ++  + +   +t+    ++++v+r ++fdfl ++v +
  Csa08g057380.1  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTVSSLHLKNCVERYNVFDFLREVVSK 86
                    5789************************************************************************99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-25372IPR009072Histone-fold
SuperFamilySSF471131.62E-19499IPR009072Histone-fold
PfamPF008084.2E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK  60
TVSSLHLKNC VERYNVFDFL REVVSKVPDY GHGHGQSQGH ADVAMDDRSI SKRRKPPGDE  120
VNDSDEDLKK TKVHEMGHAG ISGRGRGRGR GRGRGRSAKT AERELLHHRE MEIDPAILVA  180
PPLTQNEIKM PAPSQQHDSE KKDVDERSCQ TKQELQSPEE GNNDTNSGLG RGFDLNTQSL  240
DVEIKAPVIT ASKEMKTEEY PCWSIPNMGN IDPVQLANMS KRLDEDEEDY DEEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145154RGRGRGRGRG
2145155RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g057380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423260.10.0PREDICTED: dr1-associated corepressor homolog
TrEMBLR0H7M71e-154R0H7M7_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010423260.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-102nuclear factor Y, subunit C11