PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g057230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARR-B | ||||||||
Protein Properties | Length: 594aa MW: 66470.6 Da PI: 7.4196 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 65.2 | 1.2e-20 | 228 | 281 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++Wt L + F++a++++ G +kA+Pk+il +m+v Lt+e+v+SHLQkYR+ Csa08g057230.1 228 KTKVKWTDGLNDLFLQAIRHI-GLDKAVPKKILAFMNVSYLTRENVASHLQKYRI 281 6899*****************.********************************6 PP | |||||||
2 | Response_reg | 65.8 | 2e-22 | 18 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTC.....EEEEEES..SHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHH CS Response_reg 1 vlivdDeplvrellrqalekegy.....eevaead..dgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeeda 86 vl+vdD+p++r + q+l k++y +e+++ d d+++al +lk+++ +Dli++D mp ++Gl+l ++i+ee +lp+ivv+a ++ Csa08g057230.1 18 VLVVDDDPVFRGYISQMLVKSKYrdpsvMEITVIDeaDPTKALSILKHQRnnIDLIITDYYMPSLNGLQLKRRITEEIGNLPVIVVSADAN--KE 110 89*****************888865555555555422678999999888888***********************9999********9888..67 PP HHHHHTTESEEEESS--HHHHHH CS Response_reg 87 lealkaGakdflsKpfdpeelvk 109 +e l+ Ga++fl Kp+ +l k Csa08g057230.1 111 QESLSCGAMGFLPKPIRATDLPK 133 89**************9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 1.4E-24 | 16 | 155 | No hit | No description |
SuperFamily | SSF52172 | 2.56E-23 | 16 | 140 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 6.4E-19 | 16 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 31.639 | 17 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 8.1E-20 | 18 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 8.20E-22 | 19 | 131 | No hit | No description |
SuperFamily | SSF46689 | 5.02E-16 | 226 | 285 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-21 | 226 | 285 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-24 | 228 | 281 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MAFAESLHNK SSVLRINVLV VDDDPVFRGY ISQMLVKSKY RDPSVMEITV IDEADPTKAL 60 SILKHQRNNI DLIITDYYMP SLNGLQLKRR ITEEIGNLPV IVVSADANKE QESLSCGAMG 120 FLPKPIRATD LPKIYQLALT CKRNGKSTLG TEPNHKANDT GVSVPQQIKM LPEQANVLKT 180 RKKYSSKADS RSLNSRNGSC LISTGGSRKN RKRKPNGGSE DGSQPSKKTK VKWTDGLNDL 240 FLQAIRHIGL DKAVPKKILA FMNVSYLTRE NVASHLQKYR IFLRKVADQG LMSIMSARGI 300 DSMFRHTQIK EPYFNRYTPS TSWYDTSLNN RSFYSKPGQG FGQSRLLSTT REPPVRFNQM 360 PYNYMNRSST YETHHVGSGS NLTLPIQSNL SLANQPSQNE EIRSFFEPPV MANKIGQTSQ 420 VQGFGQLGPS AINNFNNNMM SSFGSFTPNQ PGLGHFSYGM QSFLTNENTA YNPEPHANAT 480 TQPNHELPQL ENELPSFFSA ELNQFLSLED DEVCTFVNVN EGHYNGEIAN TFAAPEMNHT 540 FAAPEMNPPS FNTNPNQNQE QDANPDIGDW SFLDPQDLVD DDFMNSLFNN DMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-18 | 227 | 287 | 4 | 64 | ARR10-B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g057230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL163652 | 0.0 | AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project). | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423240.1 | 0.0 | PREDICTED: putative two-component response regulator ARR21 | ||||
Swissprot | Q9LYP5 | 0.0 | ARR21_ARATH; Putative two-component response regulator ARR21 | ||||
TrEMBL | R0H0F3 | 0.0 | R0H0F3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423240.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6113 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07210.1 | 0.0 | response regulator 21 |