PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g056240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 544aa MW: 60010.8 Da PI: 7.3222 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.5 | 9.9e-18 | 287 | 336 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L +++eYI+ Lq Csa08g056240.1 287 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFLLEVIEYIQFLQ 336 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.225 | 285 | 335 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-23 | 285 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.54E-19 | 286 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.52E-15 | 287 | 338 | No hit | No description |
Pfam | PF00010 | 3.3E-15 | 287 | 336 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.4E-13 | 291 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MELPQPRPFK TEGRKPTHDF LSLCSSHSTV HPSDPKPTPP PSSQGSHLKT HDFLQPLECV 60 GAKEEISRIN NTTTASEKPP PPAPPPPLQH VLPGGIGTYT ISPIPYFHHH HQRVPKPELS 120 PPMMFTAAAQ ASGGNERNIL DENSNSNCSS YAAAASGFTL WDESASGKKG QTRKENNVGE 180 RVNMRADVAA AVGQWPVVER RSQSLTNNHM SGFSSRSSSQ GSGFKSQSFM DMIRSAKGSS 240 QEDDLDDEDD FLMKKESSST SQSHRVDLRV KADVRGSGNE QKLSTPRSKH SATEQRRRSK 300 INDRFQMLRQ LIPNSDQKRD KASFLLEVIE YIQFLQEKAD KYETSYQGWN HEPAKLLNWQ 360 RNNQQLVPEG TVAFAPKLEE EKNNIPVPVL ATAQGVAMDH PTAATTFPLS IQSNNFFSPV 420 IAGNPVPQFH TRVGSSEAVE PIPSSRGQTQ PLKEEEEVVE DEEILEGNIS ISSVYSQGLV 480 KTLREALENS GVDLTKASIS VEIELAKQSA SSFKDHEARG PVSRTRNEDV KQTRKPKRLK 540 TGQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g056240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353313 | 0.0 | AK353313.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-P07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010423132.1 | 0.0 | PREDICTED: transcription factor BIM1-like isoform X1 | ||||
Swissprot | Q9LEZ3 | 0.0 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | R0FDU1 | 0.0 | R0FDU1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010423132.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6967 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.4 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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