PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g054920.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 223aa MW: 25220.3 Da PI: 8.077

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g054920.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	131	171	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Csa08g054920.1 131 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 171 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.091	122	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.72E-14	127	180	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	128	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.0E-12	128	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-6	132	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.75E-6	145	176	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MNNNYNNMNP SLFQNYTWNN IINSSNNKNE HHHHQHHNDP IGMVMDQHTH LHIFNPFSSS 60 HFTPLSSSLA TTTLFSGDQE DEEEPLEELD AMKEMMYKIA AMQPVDIDPA SVKKPKRRNV 120 RISDDPQSVA ARHRRERISE RIRILQRLVP GGTKMDTASM LDEAIRYVKF LKRQIRLLNN 180 NPGNPPPLPQ DQASQAVTTT SWVSRPPPPN FGGREGGGGV LI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	218	GGREGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the female reproductive tract development and fertility. {ECO:0000269\|PubMed:17855426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g054920.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269\|PubMed:17855426}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254597	0.0	AC254597.1 Capsella rubella clone CAP08-M05, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019084628.1	1e-166	PREDICTED: transcription factor HEC3-like
Swissprot	Q9LXD8	4e-88	HEC3_ARATH; Transcription factor HEC3
TrEMBL	A0A398A5Q2	2e-98	A0A398A5Q2_BRACM; Uncharacterized protein
STRING	XP_010422947.1	1e-165	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4449	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09750.1	2e-53	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhu L, et al. A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis. Plant Cell, 2016. 28(4): p. 855-74 [PMID:27073231]