PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g054880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 301aa MW: 34366.4 Da PI: 10.1166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 19 | 110 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkvl + d +++++ +p +fa+ + ++ t++++ ++g +Wev++ +k+++ ++ ++GW++Fv++n L ++f+ F+++++++f+ v Csa08g054880.1 19 FFKVLNSLDISSENMRAIPHDFARCFPDDE-LLGTMKITVPWGSTWEVRV--SKNPRFyFMEKSGWEKFVRDNALGRNEFLCFTHKEEMDFS--V 108 99*********************7776665.555****************..******555569********************99989994..4 PP EE CS B3 95 kv 96 + Csa08g054880.1 109 NI 110 44 PP | |||||||
2 | B3 | 37.9 | 3.1e-12 | 222 | 294 | 16 | 93 |
EE--HHH.HTT.---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 16 lvlpkkfaeeh.ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 l lp+ a+++ +s ++++ +++g +sW+v + +++++++++GW++ +k+ + gD++ F+l++ fel+ Csa08g054880.1 222 LGLPRYAANDYlP--RVKS-MVKIHHPDGeKSWSVVY--LVTRRGHLFSGGWRRLCKEYPIAFGDTCKFTLIK--PFELL 294 6789888888843..3344.8*****9999*******..999999*************************986..55554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.5E-20 | 14 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.9E-19 | 15 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.72E-18 | 17 | 110 | No hit | No description |
Pfam | PF02362 | 9.8E-17 | 19 | 110 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.689 | 19 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.0E-19 | 19 | 109 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 5.3E-16 | 206 | 297 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.77 | 207 | 300 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.45E-8 | 210 | 296 | No hit | No description |
SMART | SM01019 | 8.9E-14 | 210 | 300 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-12 | 220 | 295 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.6E-10 | 221 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGSNPEFVRF YGERTQPSFF KVLNSLDISS ENMRAIPHDF ARCFPDDELL GTMKITVPWG 60 STWEVRVSKN PRFYFMEKSG WEKFVRDNAL GRNEFLCFTH KEEMDFSVNI MTQTGKEMVQ 120 PPKTRDFLAS SSRVKTEQEG VKTEEVVVSS ELSSRVPRTA AGTSRGGMYK RNLNFGKKKA 180 EESHNTKRTE RVFSIRRDHA GASSFSVAGF EIVISKTYLI SLGLPRYAAN DYLPRVKSMV 240 KIHHPDGEKS WSVVYLVTRR GHLFSGGWRR LCKEYPIAFG DTCKFTLIKP FELLLVVTKP 300 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g054880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254597 | 2e-87 | AC254597.1 Capsella rubella clone CAP08-M05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084627.1 | 0.0 | PREDICTED: B3 domain-containing protein REM23-like | ||||
Swissprot | Q9LXE1 | 1e-130 | REM23_ARATH; B3 domain-containing protein REM23 | ||||
TrEMBL | R0FG33 | 1e-154 | R0FG33_9BRAS; Uncharacterized protein | ||||
STRING | XP_010422943.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09780.1 | 1e-126 | B3 family protein |
Publications ? help Back to Top | |||
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