PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g052950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 444aa    MW: 50099.5 Da    PI: 7.6046
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g052950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.61.4e-4161353128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     +G+rF+Pt eel+++yLk+k+ gk+  ++e+i+e++i+++ P  Lp  +k+++++  wyfFs+++ +++++k ++r+t sgyWkatg d+++++k
  Csa08g052950.1   6 VGYRFSPTGEELINHYLKNKILGKTWLVDEAISEINICSYVPFYLPslAKIQSDDLVWYFFSPKEYTSSKKKVTKRTTGSGYWKATGVDRKIKDK 100
                     7************************999999***************5448888888**************************************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ ++g+kktLv+y+g+ p+g++t Wvmhey++
  Csa08g052950.1 101 rgNRGEIGIKKTLVYYEGKVPNGVRTPWVMHEYHI 135
                     666667***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100545.1634153IPR003441NAC domain
SuperFamilySSF1019413.14E-455153IPR003441NAC domain
PfamPF023652.0E-246135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MLKDLVGYRF SPTGEELINH YLKNKILGKT WLVDEAISEI NICSYVPFYL PSLAKIQSDD  60
LVWYFFSPKE YTSSKKKVTK RTTGSGYWKA TGVDRKIKDK RGNRGEIGIK KTLVYYEGKV  120
PNGVRTPWVM HEYHITCLPQ DQRNYVICQV KYKGEDGDIP FGGNYSSEPS QSMVSDSNSV  180
RAAVNRAPKF EQPGQDKIFG ISVDDLKSPT NKQEDLSLWD VLHPDMLFSD NNNPTLLPHL  240
SPNDDEFLGG LRHIDREQVE YLFANEEFIS TPTTYMQENR SDHRPKKPLS GIIPDYSCDT  300
DSDVESISAT SYQGTSSPGG ESVGSSSSHS QTGLDEMISL SKDLQTSHEP SISRKTRESQ  360
LKQEMKQDTS RASGASKDKK SYMVKTEKTG CFIITEEAME RNRKTPRYIY LVRMIIGFIL  420
LLALIGNIIS VLSTNSQIRK HSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-26713518140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00426DAPTransfer from AT4G01550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g052950.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456147.10.0PREDICTED: NAC domain-containing protein 69
SwissprotQ9M1260.0NAC69_ARATH; NAC domain-containing protein 69
TrEMBLR0GRZ70.0R0GRZ7_9BRAS; Uncharacterized protein
STRINGXP_010456147.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.10.0NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]