PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g051730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 403aa MW: 44222.8 Da PI: 9.1759 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Csa08g051730.1 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.8 | 0.00035 | 160 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Csa08g051730.1 160 WKCEKCSKFYAVQSDWKAHTKIC 182 58*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 82 | 105 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.24E-6 | 82 | 105 | No hit | No description |
SMART | SM00355 | 0.017 | 83 | 105 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 6.1E-5 | 83 | 105 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 83 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.24E-6 | 155 | 180 | No hit | No description |
SMART | SM00355 | 180 | 160 | 180 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MDMFSSHSLS YKLTSLSTEA SASSGNTLST IQGFSGFNNV TSSLCTHTET HKNKKRRGLP 60 GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQKSSKEQQ 120 KKKVYVCPET KCAHHHPSRA LGDLTGIKKH FCRKHGEKKW KCEKCSKFYA VQSDWKAHTK 180 ICGTREYRCD CGTLFSRKDS FITHRAFCDA LAEESARIIS TSSSNLTNPS PNLQDHHHFM 240 VNKSSPLLFT SPLCVEPSHS TAALSSTAAL SATALLQKAT ALSSSAIGGV GQTRLVGHHH 300 RHLTNVNELL GVGVDQVMMT SSEYDQLAST WQKADRLTRD FLGLTGHGVH VSVRPGDMLG 360 YAGGVAFPVS AYDTESHHDH DSSSSLQKSY DLGFSGAHHH TI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-36 | 156 | 225 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-36 | 156 | 225 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g051730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493672 | 0.0 | AB493672.1 Arabidopsis thaliana At4g02670 mRNA for hypothetical protein, partial cds, clone: RAAt4g02670. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010422558.1 | 0.0 | PREDICTED: protein indeterminate-domain 12-like | ||||
Swissprot | O22759 | 0.0 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | D7M3F3 | 0.0 | D7M3F3_ARALL; Atidd12-domain 12 | ||||
STRING | XP_010422558.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 0.0 | indeterminate(ID)-domain 12 |
Publications ? help Back to Top | |||
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