PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g049290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38914.3 Da PI: 6.5092 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.9 | 9.5e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l d+++ +G g+W+t ++ g+ R++k+c++rw +yl Csa08g049290.1 15 KGPWTPEEDKKLTDYINIHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 8e-17 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ +G++ W++Ia +++ gRt++++k++w+++ Csa08g049290.1 68 RGRFSFEEEETIIQLHSIMGNK-WSAIATRLP-GRTDNEIKNYWNTH 112 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.351 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-31 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-24 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.52E-11 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 25.125 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-15 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.27E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MGRSPCCEKK NGLKKGPWTP EEDKKLTDYI NIHGYGNWRT LPKNAGLQRC GKSCRLRWTN 60 YLRPDIKRGR FSFEEEETII QLHSIMGNKW SAIATRLPGR TDNEIKNYWN THIRKRLLKM 120 GIDPVTHSPR LDLLDISSIL NSSIFNSSHH NHQHMNMSRF MMMGDGRHQP LINPEILKLA 180 TSLFSNQNST HESHTVNQTE VNEYQTGYKM TDNQELQYWF PDPFTEFQDL MPMKSTVQDS 240 MPSFPSNYDD DYSKSNSVLE PFYSDFASVL TTPSSSPTPL NSSSTTYINS STCSTDDEKE 300 SYYSNTITST SEIPDYSFDV NGFLQFQETK NHWDSVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 13 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in salt stress response. {ECO:0000305|PubMed:26139822}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g049290.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:26139822}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF386932 | 0.0 | AF386932.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT001182 | 0.0 | BT001182.1 Arabidopsis thaliana Unknown protein (At4g05100) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010422382.1 | 0.0 | PREDICTED: transcription factor MYB35-like | ||||
Swissprot | Q9M0Y5 | 1e-177 | MYB74_ARATH; Transcription factor MYB74 | ||||
TrEMBL | R0GVX2 | 0.0 | R0GVX2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010422382.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G05100.1 | 1e-150 | myb domain protein 74 |
Publications ? help Back to Top | |||
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