PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g048930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 747aa MW: 81680.2 Da PI: 5.7423 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 63 | 118 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++eLe++F+++++p+ ++r+eL++ l+L+ qVk+WFqN+R+++k Csa08g048930.1 63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLNLEPLQVKFWFQNKRTQMK 118 688999***********************************************998 PP | |||||||
2 | START | 220.6 | 5e-69 | 254 | 474 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ela +a++elv++a+a +p+Wv+ e++n++e+ ++f+++ + ++ea+r+s+vv+m++ +lve+l+d++ qW+ + +a tle Csa08g048930.1 254 ELAVAAMEELVRMAQAVDPLWVSTDnsmEILNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCVFSgivsRALTLE 347 57899******************99999**************999********************************.***************** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v+s+g galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds ++ + ++ R +++pSg+li++++ng+skvtw+eh++ Csa08g048930.1 348 VLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWAVVDVSLDSLRPST---PILRTRRRPSGCLIQELPNGYSKVTWIEHME 439 **********************************************************976...7****************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++r++h+++r+lv+sgla+gak+wvatl+rqce+ Csa08g048930.1 440 VDDRSVHNMYRPLVHSGLAFGAKRWVATLERQCER 474 *********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 44 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-19 | 51 | 120 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-17 | 61 | 124 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-17 | 63 | 118 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-18 | 63 | 121 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.064 | 245 | 477 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.02E-35 | 247 | 476 | No hit | No description |
CDD | cd08875 | 3.12E-126 | 249 | 473 | No hit | No description |
SMART | SM00234 | 1.3E-77 | 254 | 474 | IPR002913 | START domain |
Pfam | PF01852 | 2.0E-58 | 255 | 474 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-7 | 351 | 474 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.37E-26 | 493 | 732 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG AEVTTENPSG EELQDPNQRP 60 NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLN LEPLQVKFWF QNKRTQMKAQ 120 SERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE 180 EIDRISAIAA KYVGKPLGSS FAPLAIHAPS RSLDLEVGNF GNQTGFGGEM YGTGDILRSA 240 VSIPSDTDKP IIVELAVAAM EELVRMAQAV DPLWVSTDNS MEILNEEEYF RTFPRGIGPK 300 PLGLRSEASR ESAVVIMNHI NLVEILMDVN QWSCVFSGIV SRALTLEVLS TGVAGNYNGA 360 LQVMTAEFQV PSPLVPTREN YFVRYCKQHS DGSWAVVDVS LDSLRPSTPI LRTRRRPSGC 420 LIQELPNGYS KVTWIEHMEV DDRSVHNMYR PLVHSGLAFG AKRWVATLER QCERLASSMA 480 SNIPGDLSVI TSPEGRKSML KLAERMVMSF CSGVGASTAH AWTTMSTTGS DDVRVMTRKS 540 MDDPGRPPGI VLSAATSFWI PVAPKRVFDF LRDENSRKEW DILSNGGMVQ EMAHIANGHE 600 PGNCVSLLRV NSGNSSQSNM LILQESCTDA SGSYVIYAPV DIVAMNVVLS GGDPDYVALL 660 PSGFAILPDG SVGGGDGNHQ EVVSSTSFGS CGGSLLTVAF QILVDSVPTA KLSLGSVATV 720 NSLIKCTVER IKAAVACDNG GAGGGA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g048930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF424560 | 0.0 | AF424560.1 Arabidopsis thaliana AT4g04890/T1J1_3 mRNA, complete cds. | |||
GenBank | AY062575 | 0.0 | AY062575.1 Arabidopsis thaliana Unknown protein (At4g04890; T1J1.3) mRNA, complete cds. | |||
GenBank | BT000144 | 0.0 | BT000144.1 Arabidopsis thaliana Unknown protein (At4g04890) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010422328.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1 | ||||
Refseq | XP_010422329.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1 | ||||
Refseq | XP_010422330.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like isoform X1 | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | R0FD46 | 0.0 | R0FD46_9BRAS; Uncharacterized protein | ||||
STRING | XP_010422328.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Publications ? help Back to Top | |||
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