PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g048630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 385aa    MW: 42604.2 Da    PI: 9.4093
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g048630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.87.9e-1029572250
                    HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50
                    KKA ELSvLC+  v  i +++++ l+ ++
  Csa08g048630.1 29 KKATELSVLCGNSVGFICYGPDNDLHVWP 57
                    8**************************98 PP
2SRF-TF29.87.7e-102692972250
                     HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  22 KKAeELSvLCdaevaviifsstgklyeys 50 
                     KKA ELSvLC+  v  i +++++ l+ ++
  Csa08g048630.1 269 KKATELSVLCGNSVGFICYGPDNDLHVWP 297
                     9**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-91887IPR002100Transcription factor, MADS-box
PfamPF003197.4E-72856IPR002100Transcription factor, MADS-box
CDDcd002663.04E-14251327No hitNo description
SuperFamilySSF554553.79E-11255331IPR002100Transcription factor, MADS-box
PfamPF003193.1E-7260296IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAPRDKVGGD DDLKRKNNYF KQIFPAFKKK ATELSVLCGN SVGFICYGPD NDLHVWPEPQ  60
DNPQALPEIV GKFNALSDHM RMSHASDLFD LPYLKGLSDE ELLRHLAKLN SHLVGIKQSK  120
MTILKIRGNS KKRNDHLRVS ENAAAIIPNH KVAASSGDRL GFGESGYVIR DSHETVVSSL  180
GSSAAASKVF SVSDSSPLML GLSCGDYFPA TDNSRVIPSD LQNQSELRSS SLPFNIAPRD  240
KNPNKSGGDD DFKRAKKNFF KQIFPTFKKK ATELSVLCGN SVGFICYGPD NDLHVWPEPQ  300
DNPRAIQEII GKFNGLSDYK RKNHASDLYD FPNLKGLSGD ELRNHLINLE SHLLGIKQKK  360
LSISRRENSK PRDIGVSNSS VFHL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g048630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019083117.11e-179PREDICTED: uncharacterized protein LOC104700767 isoform X1
RefseqXP_019083118.11e-179PREDICTED: uncharacterized protein LOC104700767 isoform X1
SwissprotQ9ZUI91e-54AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLR0I9889e-79R0I988_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010424594.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.11e-56AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]