PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g043930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HSF | ||||||||
Protein Properties | Length: 371aa MW: 39301.6 Da PI: 4.4746 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 113.3 | 1.6e-35 | 52 | 142 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k+y++++d+ ++elisw+++g+sf+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+k ll++ Csa08g043930.1 52 FLTKTYQLVDDPVYDELISWNDDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLRD 137 9*****************************************************************99.........****************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k Csa08g043930.1 138 IQRRK 142 ***98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 6.8E-59 | 48 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 8.7E-38 | 49 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.84E-35 | 49 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 3.9E-20 | 52 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 9.9E-32 | 52 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 91 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-20 | 103 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 1.1E-4 | 219 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGAGGGGG GGDSQRSIPT PFLTKTYQLV 60 DDPVYDELIS WNDDGTSFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW 120 EFSNDCFRRG EKILLRDIQR RKIPQPAMAA AAAAAAAAVA ASAVTVAAVP VVAHAVSPSN 180 SGEEQVISSN SSPAAAAAAT GGVVGVGLQR TTSCTTAPEL VEENERLRKE NMQLSQELTK 240 LKSLYANIYT LMANFTPGQA DCANLLPEGK PLDLLPEKQG MSEEAMAMAS RIDAGSDLKL 300 DDDLTPRLFG VSIGFKRARR EEELGAAEEE DDDRQEAVTR EGEESSDVKP EPMEENNSSN 360 HNGPWLELGK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 1e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 1e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 1e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 1e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 1e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g043930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY093206 | 0.0 | AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds. | |||
GenBank | BT008471 | 0.0 | BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010422122.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b | ||||
Swissprot | Q9T0D3 | 1e-167 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | V4N026 | 0.0 | V4N026_EUTSA; Uncharacterized protein | ||||
STRING | XP_010422122.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 1e-154 | HSF family protein |
Publications ? help Back to Top | |||
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