PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g043210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WRKY | ||||||||
Protein Properties | Length: 314aa MW: 35183.3 Da PI: 6.4169 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 88.8 | 4.4e-28 | 136 | 196 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD y+WrKYGqK++ g+++prsYYrCt++ C+++k+v+rs+ dp+++e+tY+g+H+++ Csa08g043210.1 136 DDVYSWRKYGQKDILGAKYPRSYYRCTFRntqCCWATKQVQRSDGDPTIFEVTYRGTHTCS 196 8**************************99776799************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.425 | 130 | 193 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.2E-27 | 131 | 197 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 134 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-37 | 135 | 197 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-25 | 136 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEMMNWEQRN LLNELIHGLR AAKQLQASPA PSSSSSSSCL TSEMKETLLQ QVVSSYEKAI 60 MMLNGSHNPT TERVMDPVVN SGKVPESPAS INESPKSEEF LDVGCKDYSC KKRKMLPKWT 120 EQVRISPERG LEGPHDDVYS WRKYGQKDIL GAKYPRSYYR CTFRNTQCCW ATKQVQRSDG 180 DPTIFEVTYR GTHTCSQQGN TPPHKRAETK PNQNHIVEVV NYQNNLLDNL RTNLTVRTDG 240 LEGHGFSFPV TPPPFYSYET FCHVGSSGPS DFTGLISTNT STGSSPIFDV DFQFDPTAEI 300 DTTGFPTFLH DSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-17 | 137 | 193 | 18 | 74 | Disease resistance protein RRS1 |
5w3x_D | 1e-17 | 137 | 193 | 18 | 74 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g043210.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010422045.1 | 0.0 | PREDICTED: probable WRKY transcription factor 41 | ||||
Swissprot | Q8H0Y8 | 1e-153 | WRK41_ARATH; Probable WRKY transcription factor 41 | ||||
TrEMBL | R0GW30 | 1e-179 | R0GW30_9BRAS; Uncharacterized protein | ||||
STRING | XP_010422045.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1933 | 27 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-147 | WRKY family protein |
Publications ? help Back to Top | |||
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