PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g039170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family DBB
Protein Properties Length: 162aa    MW: 17565.6 Da    PI: 4.993
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g039170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box185.9e-06445539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                     C+ +e+ e++  C +++  lC+ C  + H+        H+v
  Csa08g039170.1  4 LCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEAnkifqrhHRV 45
                    7*****************************767888884444 PP
2zf-B_box26.21.6e-086097338
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeH..kgHt 38
                    ++ C+ ++e +  +fC +++ llC+dC  ++H  ++H+
  Csa08g039170.1 60 APLCDICQERKGYFFCIEDRALLCNDCDGAIHtcNSHQ 97
                    689******99********************9434487 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000212.44E-5347No hitNo description
SMARTSM003364.4E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.18658101IPR000315B-box-type zinc finger
SMARTSM003363.5E-1158101IPR000315B-box-type zinc finger
PfamPF006431.6E-66097IPR000315B-box-type zinc finger
CDDcd000215.05E-761101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MKILCEVCEK AEAEVLCCSD EAVLCKPCDI KVHEANKIFQ RHHRVALQKD AASATTSSGA  60
PLCDICQERK GYFFCIEDRA LLCNDCDGAI HTCNSHQRFL LPGVQVSDQS LTENSGCSTS  120
FSSETYQTHS KASLNSQYSN EETEAGNSAA IDKNPSVILN P*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in seedling photomorphogenesis. {ECO:0000250|UniProtKB:Q9SJU5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g039170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1229160.0AY122916.1 Arabidopsis thaliana putative zinc-finger protein (At4g10240) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421942.11e-116PREDICTED: B-box zinc finger protein 23-like
RefseqXP_010455422.11e-116PREDICTED: B-box zinc finger protein 23-like
SwissprotO826171e-95BBX23_ARATH; B-box zinc finger protein 23
TrEMBLD7LY291e-98D7LY29_ARALL; Zinc finger (B-box type) family protein
STRINGXP_010421942.11e-116(Camelina sativa)
STRINGXP_010455422.11e-116(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125022430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10240.14e-98DBB family protein
Publications ? help Back to Top
  1. Zhang X, et al.
    A PIF1/PIF3-HY5-BBX23 Transcription Factor Cascade Affects Photomorphogenesis.
    Plant Physiol., 2017. 174(4): p. 2487-2500
    [PMID:28687557]