PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g035270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 236aa    MW: 26203.5 Da    PI: 8.8098
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g035270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d ++ +G g+W++ ++  g+ R++k+c++rw +yl
   Csa08g035270.1 14 KGAWTKEEDQRLIDHIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding57.14.1e-1867111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T eEd+++++++ +lG++ W++Ia +++ gRt++++k++w+++
   Csa08g035270.1  67 RGNFTNEEDQIIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.375961IPR017930Myb domain
SMARTSM007176.6E-131363IPR001005SANT/Myb domain
SuperFamilySSF466893.31E-2913108IPR009057Homeodomain-like
PfamPF002491.5E-151461IPR001005SANT/Myb domain
CDDcd001675.18E-111661No hitNo description
PROSITE profilePS5129428.49362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2865116IPR009057Homeodomain-like
SMARTSM007173.6E-1766114IPR001005SANT/Myb domain
PfamPF002492.4E-1667111IPR001005SANT/Myb domain
CDDcd001671.04E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLIDHIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TNEEDQIIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSHG  120
IDPQTHRPIN DTKAVPSQIV VVGPNQNDAV EYSLSNLAVK QENSSGASTS GTTTDEDLRQ  180
NGECYYSGDN SERIELNLDL TLGFGSGSGR VVGAGLLADS KPWRDQLMAA RLSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-311311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g035270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU269360.0U26936.1 Arabidopsis thaliana clone myb6 DNA-binding protein mRNA, complete cds.
GenBankAY0868130.0AY086813.1 Arabidopsis thaliana clone 28019 mRNA, complete sequence.
GenBankAY5196040.0AY519604.1 Arabidopsis thaliana MYB transcription factor (At4g09460) mRNA, complete cds.
GenBankBT0041710.0BT004171.1 Arabidopsis thaliana clone RAFL15-40-D03 (R20880) putative myb family transcription factor (At4g09460) mRNA, complete cds.
GenBankBT0050850.0BT005085.1 Arabidopsis thaliana clone U20880 putative myb family transcription factor (At4g09460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421847.11e-174PREDICTED: transcription repressor MYB6
SwissprotQ388511e-145MYB6_ARATH; Transcription repressor MYB6
TrEMBLR0HCS41e-157R0HCS4_9BRAS; Uncharacterized protein
STRINGXP_010421847.11e-174(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-139myb domain protein 6