PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa08g029800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 181aa MW: 20816.5 Da PI: 6.9377 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.7e-18 | 95 | 178 | 9 | 97 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 dv k +pkkf++ h+ + ++k+ ++ +++g +sWev++ ++ + +++GW++F+k+ gL++gD+++Fkl++ +e +vkv Csa08g029800.1 95 DVKKDEETGIPKKFVDMHMPN--QTKMFKIHHPTGkKSWEVTY--VVTDVQSRFSAGWSRFAKELGLEVGDVCTFKLIE--PTEICVKVS 178 788888899*********855..778999***99989******..555555569**********************986..555677775 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 12.238 | 87 | 180 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-11 | 93 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-13 | 95 | 177 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.08E-14 | 95 | 179 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.6E-18 | 100 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.04E-17 | 102 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 181 aa Download sequence Send to blast |
MVRNRVFGQV MEEGDNPAFF KILRREDLSS EIMFVNDNGL GENEYLTFTH EANRCFNVNT 60 YEENGKEMLK PRQSSTITSS SGRSKREERN SNYIDVKKDE ETGIPKKFVD MHMPNQTKMF 120 KIHHPTGKKS WEVTYVVTDV QSRFSAGWSR FAKELGLEVG DVCTFKLIEP TEICVKVSKE 180 * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa08g029800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084284.1 | 1e-127 | PREDICTED: B3 domain-containing protein At5g18000-like | ||||
Swissprot | Q9FJG2 | 2e-41 | Y5800_ARATH; B3 domain-containing protein At5g18000 | ||||
TrEMBL | D7LXR4 | 2e-49 | D7LXR4_ARALL; Transcriptional factor B3 family protein | ||||
STRING | XP_010424401.1 | 1e-108 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18000.1 | 1e-43 | VERDANDI |
Publications ? help Back to Top | |||
---|---|---|---|
|