PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g029550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 285aa MW: 32163.6 Da PI: 8.1173 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.6 | 5.7e-17 | 31 | 78 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50 ++ s++++ +s R ++++KKA+EL +LCd+ev+v +++++g+l ++++ Csa08g029550.1 31 SSVSKKTTNLSLREQTMFKKASELLILCDIEVCVTYYGHDGELiKTWP 78 6788999***********************************856886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-4 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.601 | 30 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-10 | 34 | 73 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.21E-18 | 34 | 105 | No hit | No description |
SuperFamily | SSF55455 | 6.02E-13 | 34 | 104 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MASSSMLTKD KTTKLLSVRN RKCFKKQPSL SSVSKKTTNL SLREQTMFKK ASELLILCDI 60 EVCVTYYGHD GELIKTWPED QSKVRDMVER FSKLNDRERR KKSTDFSLFL NKKTLKDKMT 120 SLDIKDNRFS EKVLEMEASL ESSLRVLQDK LLWLQNQTEP DQNPVVSSAG FFTTDPSLMS 180 GVSKTEQDLS TPSLTQQHQS KVSVFLYNHD NGSFCQLPDS DSVSSFDPSM STASLGAQGL 240 CLRIYNTDLP MVFPPQIQIQ TQTPPLVHFD QFAGLNNQNS VVFC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g029550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 2e-50 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424393.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q7X9H9 | 3e-90 | AGL93_ARATH; Agamous-like MADS-box protein AGL93 | ||||
TrEMBL | R0H119 | 1e-116 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010424393.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27070.1 | 5e-79 | AGAMOUS-like 53 |
Publications ? help Back to Top | |||
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