PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g029550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 285aa    MW: 32163.6 Da    PI: 8.1173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g029550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.65.7e-173178450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++ s++++ +s R ++++KKA+EL +LCd+ev+v +++++g+l ++++
  Csa08g029550.1 31 SSVSKKTTNLSLREQTMFKKASELLILCDIEVCVTYYGHDGELiKTWP 78
                    6788999***********************************856886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41979IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.6013080IPR002100Transcription factor, MADS-box
PfamPF003194.2E-103473IPR002100Transcription factor, MADS-box
CDDcd002665.21E-1834105No hitNo description
SuperFamilySSF554556.02E-1334104IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MASSSMLTKD KTTKLLSVRN RKCFKKQPSL SSVSKKTTNL SLREQTMFKK ASELLILCDI  60
EVCVTYYGHD GELIKTWPED QSKVRDMVER FSKLNDRERR KKSTDFSLFL NKKTLKDKMT  120
SLDIKDNRFS EKVLEMEASL ESSLRVLQDK LLWLQNQTEP DQNPVVSSAG FFTTDPSLMS  180
GVSKTEQDLS TPSLTQQHQS KVSVFLYNHD NGSFCQLPDS DSVSSFDPSM STASLGAQGL  240
CLRIYNTDLP MVFPPQIQIQ TQTPPLVHFD QFAGLNNQNS VVFC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g029550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026882e-50CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424393.10.0PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H93e-90AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1191e-116R0H119_9BRAS; Uncharacterized protein
STRINGXP_010424393.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.15e-79AGAMOUS-like 53
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]