PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g029500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19133.6 Da PI: 8.2023 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22 | 2.2e-07 | 15 | 51 | 4 | 40 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 e k +r v skRr++++ A L+ L +a++av + Csa08g029500.1 15 ETKQQRAVACSKRRQTVFSNAADLCHLSGANIAVFVT 51 77999****************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-8 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.386 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.07E-16 | 5 | 89 | No hit | No description |
SuperFamily | SSF55455 | 6.41E-13 | 6 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-7 | 15 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MKKGTKRKIE TKKRETKQQR AVACSKRRQT VFSNAADLCH LSGANIAVFV TFPSEISNVV 60 YSFSGYSPAH EIADCYLNRK PPPKIEVKPQ SKLGFWWEDP DLYHSCDDLS ELNILEDRIE 120 RVKKHVMACL EKKEKLQSVS NTEQNPNTYS LDEDYDRGFD LNSSPST* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g029500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493762 | 1e-116 | AB493762.1 Arabidopsis thaliana At5g27130 gene for hypothetical protein, partial cds, clone: RAAt5g27130. | |||
GenBank | CP002688 | 1e-116 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | TM021B04 | 1e-116 | AF007271.1 Arabidopsis thaliana BAC TM021B04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019090030.1 | 1e-112 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0HBN4 | 2e-87 | R0HBN4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010424391.1 | 1e-116 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27130.1 | 5e-74 | AGAMOUS-like 39 |