PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g027770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22889 Da PI: 7.4526 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.6e-16 | 31 | 74 | 4 | 47 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 ++ s++++ + R ++++K A+ELS+LCd+ev++i+++ +g+l Csa08g027770.1 31 SSVSKKTTNLPLREQTMFKIASELSILCDIEVCLIYYGRDGELV 74 677888999999*****************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.9E-4 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.503 | 30 | 80 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.36E-11 | 34 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.7E-9 | 43 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MASSSMLTKD KTKNLLSVRN RRCFKKQPSL SSVSKKTTNL PLREQTMFKI ASELSILCDI 60 EVCLIYYGRD GELVKIWPED QSKTLKDKKT SFDNKDHRFS EKVLEMEASL ESALRLLQDK 120 LLRLQNQTEP DQNPVVSSAG FFTTDPSLMS GVSKTEQDLS TPSLTQQHQS KVSVFLYNHD 180 NGSFCQLPHS VSTFDPSIDD FV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g027770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY141217 | 1e-41 | AY141217.1 Arabidopsis thaliana MADS-box protein AGL53 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-41 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F15P11 | 1e-41 | AF160760.1 Arabidopsis thaliana BAC F15P11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084677.1 | 1e-141 | PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL53 | ||||
Swissprot | Q7X9N2 | 8e-58 | AGL53_ARATH; Agamous-like MADS-box protein AGL53 | ||||
TrEMBL | R0H119 | 1e-78 | R0H119_9BRAS; Uncharacterized protein | ||||
STRING | XP_010424393.1 | 1e-115 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5753 | 9 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27944.1 | 5e-52 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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