PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g027560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24395.6 Da    PI: 8.211
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g027560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.47.7e-183178450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++ s++++ +  R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa08g027560.1 31 SSVSKKTTNLPLREHTMFKKASELSILCDIEVCVIYYDRDGELvKTWP 78
                    677889999999*****************************9747887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-61979IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.3443073IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-123487IPR002100Transcription factor, MADS-box
PfamPF003191.8E-114374IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MASSSMLTKN KTTKLLSVRN RRCFKKQPSL SSVSKKTTNL PLREHTMFKK ASELSILCDI  60
EVCVIYYDRD GELVKTWPED QSKTLKDKKT SFDITDNKFS EKVLEMEDSL ESALRVLQDK  120
LLRLQNQTEP DQNPVVSSAG FFTKDPSLMS GVSKTEQDLS TPSLTQQHQS KVSLFLYNHD  180
NGSFCQLPHS VSTFDPSTSS ASLGAQGICL RSTTELGQ*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g027560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010455071.11e-128PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H92e-62AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1198e-83R0H119_9BRAS; Uncharacterized protein
STRINGXP_010455071.11e-128(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26950.18e-65AGAMOUS-like 93
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]