PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g027460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25752.7 Da PI: 9.769 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.1 | 2.7e-19 | 3 | 42 | 2 | 41 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ien++ r+ tf kR+ gilKKA+EL +LCd+ ++vi+ s Csa08g027460.1 3 FIENETARKSTFKKRKRGILKKAHELATLCDVPICVIVNS 42 8************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.876 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-17 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.73E-23 | 1 | 78 | No hit | No description |
SuperFamily | SSF55455 | 4.06E-22 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.2E-18 | 3 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-5 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.3E-5 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MAFIENETAR KSTFKKRKRG ILKKAHELAT LCDVPICVIV NSAYESNPEV WPSREAADKV 60 VSQWRMMSVM DQTKKMVNQE SFLQQRITKA TESWRKARRE NKELEMKNIM FDCLSGKTLV 120 SRLPKSDLRD FGSVIEQHLK DVNRRMEILK RNDDESSSSL VPIDAATTSS AMPMIEMGSS 180 SSSVMPMIEM GSSSVGFHEK ILDQIQNTLN MKNTNKDLDL NKKQW* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g027460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB830690 | 1e-179 | AB830690.1 Turritis glabra AGL35 gene for agamous-like MADS-box protein AGL35, partial cds, isolate: e058. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421527.1 | 1e-167 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | S6B3Z0 | 1e-120 | S6B3Z0_TURGL; Agamous-like MADS-box protein AGL35 | ||||
STRING | XP_010421527.1 | 1e-166 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 1e-100 | M-type_MADS family protein |