PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g027450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 143aa MW: 16103 Da PI: 6.217 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38.5 | 1.5e-12 | 2 | 34 | 15 | 47 |
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgkly 47 kR++gi+KK +EL +LC+++++ +i+s+ + + Csa08g027450.1 2 KRKKGIMKKLHELTTLCGVQACGVIYSPYQAVP 34 9**************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.993 | 1 | 28 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.40E-16 | 2 | 43 | No hit | No description |
SMART | SM00432 | 6.3E-4 | 2 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-10 | 2 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.8E-13 | 2 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 143 aa Download sequence Send to blast |
MKRKKGIMKK LHELTTLCGV QACGVIYSPY QAVPEVWPSK EEEVYNSMTW IHDLNSDLNH 60 NMTLNLDLNS NQYLNQENSF NDMMLAQNVG YAGGHAIIPF IDHYNYHQQP TGYLAITNNM 120 PSITSSTTST TSVYGSYINN NF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g027450.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010424357.1 | 5e-59 | PREDICTED: agamous-like MADS-box protein AGL36 | ||||
TrEMBL | R0FKQ9 | 8e-31 | R0FKQ9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010424357.1 | 2e-58 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27960.1 | 2e-18 | AGAMOUS-like 90 |