PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g024440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 525aa MW: 58721.6 Da PI: 6.5473 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.9 | 4.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l+++++++G g+W+++++ g+ R++k+c++rw +yl Csa08g024440.1 14 KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.3e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l++++++ lG++ W+ Ia +++ gRt++++k++w++ Csa08g024440.1 67 RGAFSQDEESLIIELHAALGNR-WSQIATRLP-GRTDNEIKNFWNS 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.515 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.77E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.906 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.96E-10 | 69 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MGRHSCCFKQ KLRKGLWSPE EDEKLLNYIT RHGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGAF SQDEESLIIE LHAALGNRWS QIATRLPGRT DNEIKNFWNS CLKKKLRRKG 120 IDPTTHKPLV TSELQTLNVI DHKLTSSEVA KSTGSINNPH DQSMVVSSQS GPWWFPATTT 180 TTNQNAAFCF SSSNTTPTVS DQIVSLISSM STSSSPTPMT SNFNPAPNNW EQQLNYCNTV 240 PSQSNSIYSA FFGNHYTEAS QVMNTNNNNN PVVDHHHQDM KSWASEIFHY TEQNQSSETG 300 LEAEVKPDIA KYYWRSASSS SSPNQEAATL LHDADVEVYG PWWFPATTTT TNQNAAFCFS 360 SSNTTPTVSD QIVSLISSMS TSSSPTPMTS NFNPAPNNWE QQLNYCNTVP SQSNSIYSAF 420 FGNHYTEASQ VMNTNNNNNP VVDHHHQDMK SWASEIFHYT EQNQSSETGL EAEVKPDIAK 480 YYWRSASSSS SPNQEAATLL HDADVEVYGK NLQKLNIMVF DQSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g024440.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY099777 | 0.0 | AY099777.1 Arabidopsis thaliana transcription factor ATMYB4 (At5g26655) mRNA, complete cds. | |||
GenBank | AY519629 | 0.0 | AY519629.1 Arabidopsis thaliana MYB transcription factor (At5g26660) mRNA, complete cds. | |||
GenBank | BT008740 | 0.0 | BT008740.1 Arabidopsis thaliana At5g26655 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421520.1 | 0.0 | PREDICTED: transcription factor MYB86-like | ||||
Swissprot | Q8LPH6 | 0.0 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A178US07 | 0.0 | A0A178US07_ARATH; MYB86 | ||||
STRING | XP_010421520.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 0.0 | myb domain protein 86 |