PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g024120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 260aa MW: 29179.1 Da PI: 5.7745 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.3 | 1.1e-09 | 22 | 61 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 e k +r v skRr++++ KA L+ L +a++av + s++ Csa08g024120.1 22 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 61 77999********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.5E-16 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.32 | 11 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.20E-21 | 12 | 96 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-15 | 13 | 97 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.5E-9 | 22 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MPSSESTMKK GTKRKIEIKK RETKQQRAVA CSKRRQTVFS KAADLCHLSG ANIAVFVTSP 60 SEISDVVYSF SGYSPAQEIA DCYLNRKPPP KIEVKPQSKL GFWWEDPDLY HSCDDLSELN 120 ILEDPADLCH LSGANIAVFV TSPSEISDVV YSFSGYSPAQ EIADCYLNRK PPPKIEVKPQ 180 SKLGFWWEDP DLYNSCDDLS ELNILEDRIE RAKKHVMACL EKIEQRGKLG TKRSSLYFRF 240 DDSLLQIDPE MGLIASSNG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g024120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019084259.1 | 1e-86 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
TrEMBL | R0HBN4 | 7e-69 | R0HBN4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010421494.1 | 2e-84 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27130.1 | 1e-57 | AGAMOUS-like 39 |