PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g024120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 260aa    MW: 29179.1 Da    PI: 5.7745
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g024120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.31.1e-092261443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L+ L +a++av + s++
  Csa08g024120.1 22 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 61
                    77999********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-161170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.321161IPR002100Transcription factor, MADS-box
CDDcd002661.20E-211296No hitNo description
SuperFamilySSF554551.12E-151397IPR002100Transcription factor, MADS-box
PfamPF003198.5E-92261IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MPSSESTMKK GTKRKIEIKK RETKQQRAVA CSKRRQTVFS KAADLCHLSG ANIAVFVTSP  60
SEISDVVYSF SGYSPAQEIA DCYLNRKPPP KIEVKPQSKL GFWWEDPDLY HSCDDLSELN  120
ILEDPADLCH LSGANIAVFV TSPSEISDVV YSFSGYSPAQ EIADCYLNRK PPPKIEVKPQ  180
SKLGFWWEDP DLYNSCDDLS ELNILEDRIE RAKKHVMACL EKIEQRGKLG TKRSSLYFRF  240
DDSLLQIDPE MGLIASSNG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g024120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019084259.11e-86PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN47e-69R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010421494.12e-84(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.11e-57AGAMOUS-like 39