PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g022890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TALE
Protein Properties Length: 442aa    MW: 48320.6 Da    PI: 6.2658
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g022890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-073784112154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp++e++++L +++gL+ +q+ +WF N+R +
  Csa08g022890.1 378 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 411
                     469*****************************87 PP
2ELK28.72.9e-10332353122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  Csa08g022890.1 332 ELKHELKQGYKEKIVDIREEIL 353
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-19167211IPR005540KNOX1
PfamPF037901.2E-17170210IPR005540KNOX1
SMARTSM012562.5E-29223278IPR005541KNOX2
PfamPF037912.9E-21227277IPR005541KNOX2
PROSITE profilePS512139.969332352IPR005539ELK domain
PfamPF037891.0E-6332353IPR005539ELK domain
SMARTSM011886.1E-4332353IPR005539ELK domain
PROSITE profilePS5007111.726352415IPR001356Homeobox domain
SMARTSM003892.4E-11354419IPR001356Homeobox domain
SuperFamilySSF466895.56E-16354418IPR009057Homeodomain-like
CDDcd000861.55E-11355416No hitNo description
Gene3DG3DSA:1.10.10.603.8E-25359416IPR009057Homeodomain-like
PfamPF059201.3E-17372411IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPQP PPPPPQPQHF QEAPPPNWLN SALLRSSDNN  60
GNNNFLNLHT ATANTTTASS SDSPSSAAVA ANQWLSRSSS FLQRNNNNNN ATASAVVGDG  120
IDDVTGGGGG GGGPETMIGG EMKSGGDNKN DGGGVAVADG VVSWQNARHK AEILSHPLYE  180
QLLSAHVACL RIATPVDQLP RIDAQLAQSQ HVVAKYSALG AAAQGLVGDD KELDQFMTHY  240
VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD  300
ANMFDGSLDV LGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK  360
LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS  420
TVLKNKRKSN AGDNSGRERF A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12355419872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g022890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0860910.0AY086091.1 Arabidopsis thaliana clone 21240 mRNA, complete sequence.
GenBankAY1207620.0AY120762.1 Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA, complete cds.
GenBankBT0001390.0BT000139.1 Arabidopsis thaliana KNAT3 homeodomain protein (At5g25220) mRNA, complete cds.
GenBankX923920.0X92392.1 A.thaliana mRNA for KNAT3 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010421369.10.0PREDICTED: homeobox protein knotted-1-like 3 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLR0HAQ00.0R0HAQ0_9BRAS; Uncharacterized protein
STRINGXP_010421369.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.10.0KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]