PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g022870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 189aa MW: 21434.3 Da PI: 7.5059 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.3e-18 | 7 | 55 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 +++GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + Csa08g022870.1 7 RFRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55 69******9.**********8.....334**********************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.77E-34 | 6 | 66 | No hit | No description |
PROSITE profile | PS51032 | 20.719 | 7 | 64 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 7 | 66 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-34 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.1E-41 | 7 | 70 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.8E-11 | 7 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.8E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MARPQQRFRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR 60 TNFPYNPNAV PTSSSKLLSA TLTAKLHKCY MASLQMTKQT QTQKQTQTAR LRPAETDGDI 120 NCVMANVNQF NRGGGVMTET TEIKWEDGNT NMEQNFSPLE EDHIEQMIEE LLHYGSIELC 180 SVLPTQTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-17 | 6 | 69 | 4 | 68 | ATERF1 |
3gcc_A | 7e-17 | 6 | 69 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00526 | DAP | Transfer from AT5G25190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g022870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045659 | 1e-114 | AY045659.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds. | |||
GenBank | AY059664 | 1e-114 | AY059664.1 Arabidopsis thaliana AT5g25190/F21J6_103 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421367.1 | 1e-142 | PREDICTED: ethylene-responsive transcription factor ERF003 | ||||
Swissprot | Q94AW5 | 1e-108 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | R0HCM4 | 1e-112 | R0HCM4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010421367.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 5e-86 | ERF family protein |
Publications ? help Back to Top | |||
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