PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa08g022800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 24812.5 Da PI: 8.0646 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.6e-05 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ++F ++ L H++ H Csa08g022800.1 68 FSCNYCQRTFYSSQALGGHQNAH 90 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 61 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.47E-7 | 63 | 95 | No hit | No description |
PROSITE profile | PS50157 | 11.635 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MDASIVSFSE TFPNQDSLNQ SLEQRTKDEE KDVHDSSQEH LNQELNLIDC IDTTSIVKGS 60 TSTEQKLFSC NYCQRTFYSS QALGGHQNAH KRERTLAKRG QRLAASASAF GHPYGFSPLP 120 FHGQYNNRSL GIQAHSMIHK VSSYKGFGGH YGQLNWSRIP FDQQPAIGKL PTTENFHHHH 180 HQRMMMAPSL SNNIGRSSSN IGRILEGTPA LEQWCGDGGL LK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa08g022800.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC005964 | 1e-142 | AC005964.1 Arabidopsis thaliana chromosome V map 60.5 cM, complete sequence. | |||
GenBank | AC006259 | 1e-142 | AC006259.1 Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and mapping near 60.5 cM, complete sequence. | |||
GenBank | AK227706 | 1e-142 | AK227706.1 Arabidopsis thaliana mRNA for ZFP3 zinc finger protein, complete cds, clone: RAFL14-29-I08. | |||
GenBank | ATHZFPC | 1e-142 | L39646.1 Arabidopsis thaliana zinc finger protein (ZFP3) mRNA, complete cds. | |||
GenBank | BT008308 | 1e-142 | BT008308.1 Arabidopsis thaliana At5g25160 gene, complete cds. | |||
GenBank | CP002688 | 1e-142 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421361.1 | 1e-167 | PREDICTED: zinc finger protein 3-like | ||||
Swissprot | Q39262 | 1e-112 | ZFP3_ARATH; Zinc finger protein 3 | ||||
TrEMBL | R0HCQ8 | 1e-126 | R0HCQ8_9BRAS; Uncharacterized protein | ||||
STRING | XP_010421361.1 | 1e-166 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1893 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25160.1 | 1e-106 | zinc finger protein 3 |
Publications ? help Back to Top | |||
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